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Report for CCDS36684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36684.1 Public Mus musculus 13 Gkap1 23 108 98 CCDS HistoryNCBI Gene:56278Re-query CCDS DB by CCDS ID:36684.1Re-query CCDS DB by GeneID:56278See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091579.5 ENSMUSP00000089169.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091579.5Link to Ensembl Protein Viewer:ENSMUSP00000089169.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091579Re-query CCDS DB by Protein ID:ENSMUSP00000089169
Original member Current member NCBI NM_019832.4 NP_062806.1 Accepted alive Link to Nucleotide Sequence:NM_019832.4Link to Protein Sequence:NP_062806.1Re-query CCDS DB by Nucleotide ID:NM_019832Re-query CCDS DB by Protein ID:NP_062806Link to BLAST:NP_062806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062806.1 366 Q9JMB0 366 100% 0 0

Chromosomal Locations for CCDS 36684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58233611 58233658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58236517 58236594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58236987 58237057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58238649 58238712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58241654 58241755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58243802 58243954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58251131 58251153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58255747 58255870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58259434 58259511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58263198 58263341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58263942 58264157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCCTCTGCAGTCCTCAGCTCTGTGCTCACAACTGCCTCTCGCTTTGCCCTGCTACAAGTGGACAGCG
GCAGTGGCTCTGATTCCGAGCCTGGGAAAGGCAAAGGCCGGAGTAATGGGAAGTCTCAAACTCTGGGAAA
CAAAGCAACCTCAAATGAGAAGAAACGGGAGAAGAGAAGAAAAAAGAAGGAACAGCAGCAGAGTGAAGCA
AACGAGCTCAGGAATCTTGCTTTCAAGAAAATTCCCCAGAAATCCTCCCATTCCATTTGCAATGTTCAAC
ATGAGCTTTCATCGCCAAACCCAGCACAGAAGGAGTCACGGGAAGAAAACTGGCAAGAGTGGAGACAGAA
AGATGAACAGCTGACCTCTGAAATGTTTGAAGCTGACCTTGAGAAGGCGTTGCTGTTGAGTAAGCTGGAG
TATGAAGAGCACAAACAGGATTATGAAAATGCTGAGACTGCTTCAACTCAGACAAAAGGTATAAATAAAA
AAGATAAAAGGAAGAACCACCAGGGCAAGGACAAACCTGTCACGGTGTCACTCAAAGACTTCCAGTGTGA
AGATCATATTAGTAAAAAGGCAGAGGAATCGAATTCTGCTCAGACTTTATCACACGATGGGGGATTCTTC
AATAGACTGGAAGATGATGTTCATAAGATTCTGATTAGAGAAAAAAGGAGAGAACAACTCACAGAGCACA
ACGGAACAGATAACTCTCCCGCTCCAGAGCACAACCAGGAAGTAGGTCTAAAAGATGGAAGAATTGAAAG
ACTAAAGTTAGAACTTGAAAGGAAAGACGCAGAAATTCAGAAGCTCAAAGCTGTGATCACTCAGTGGGAG
GCAAAGTATAAAGAAGTAAAAGCAAGAAATGGACAATTACTGAAAATGCTTCAGGAGGGAGAGATGAAAG
ATAAGGCCGAGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACGGTCCAGGTGTC
TTCACTTCATGCCGCACTGGAACAAGAAAGATCTAAAGTGAAAGTATTACAGGCAGAATTAGCCAAATAC
CAGGGAGGCAGGAAGGGGAAAAGGAACTTCGAACCTGACCATTGCAGGTGA

Translation (366 aa):
MASAVLSSVLTTASRFALLQVDSGSGSDSEPGKGKGRSNGKSQTLGNKATSNEKKREKRRKKKEQQQSEA
NELRNLAFKKIPQKSSHSICNVQHELSSPNPAQKESREENWQEWRQKDEQLTSEMFEADLEKALLLSKLE
YEEHKQDYENAETASTQTKGINKKDKRKNHQGKDKPVTVSLKDFQCEDHISKKAEESNSAQTLSHDGGFF
NRLEDDVHKILIREKRREQLTEHNGTDNSPAPEHNQEVGLKDGRIERLKLELERKDAEIQKLKAVITQWE
AKYKEVKARNGQLLKMLQEGEMKDKAEILLQVDESQSIKNELTVQVSSLHAALEQERSKVKVLQAELAKY
QGGRKGKRNFEPDHCR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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