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Report for CCDS36682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36682.1 Public Mus musculus 13 Idnk 23 108 98 CCDS HistoryNCBI Gene:75731Re-query CCDS DB by CCDS ID:36682.1Re-query CCDS DB by GeneID:75731See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051490.14 ENSMUSP00000060218.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051490.14Link to Ensembl Protein Viewer:ENSMUSP00000060218.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051490Re-query CCDS DB by Protein ID:ENSMUSP00000060218
Original member Current member NCBI NM_198004.3 NP_932121.2 Accepted alive Link to Nucleotide Sequence:NM_198004.3Link to Protein Sequence:NP_932121.2Re-query CCDS DB by Nucleotide ID:NM_198004Re-query CCDS DB by Protein ID:NP_932121Link to BLAST:NP_932121.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932121.2 184 Q8R0J8 184 100% 0 0

Chromosomal Locations for CCDS 36682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58157687 58157736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58159877 58159907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58160152 58160238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58162838 58162881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58163433 58163775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGAGGCACCCGGGGTGCTGCTGGTGATGGGTGTGAGCGGCTCCGGAAAATCCACTGTGGGTGCGCTGC
TG
GCCTCCAAGCTGGGATGGAAATTCTATGATGCCGATGATTACCACTCCGAGGAGAATCGGATAAAGAT
G
GCGAAAGGGGTACCACTGAGCGACCAGGACAGGATTCCATGGCTTTGCACCTTGCACGACATTTTACTA
AG
A
GATGTGGCTTTGGGACAGCCTGTTGTTCTAGCCTGTTCAGCTCTGAAGAAAACGTACAGAGACATCT
TG
ATCCGAGGAGGAAGTGATGCGCCCCTGAAAAGTGATGACTCAGCAAAGGAACCGCTGGCTGGTGGGAA
G
CTCCTGGTGGTCTACCTCTGCGGCTCGTTTGACATCATTTATGGACGCTTGCTCCAAAGAAAAGGACAT
TTT
ATGCCGCCCGAGTTACTGCAGTCCCAGTTTAGTATTCTGGAGCCCCCATCAGCTCCCGAAAACTTCA
TC
CAAGTCAGCGTGGACAAAAGTCTCCCGGAGATCACCGCTGCCGTTATGGAAGCCCTCAAGTGA


Translation (184 aa):
MEAPGVLLVMGVSGSGKSTVGALLASKLGWKFYDADDYHSEENRIKMAKGVPLSDQDRIPWLCTLHDILL
R
DVALGQPVVLACSALKKTYRDILIRGGSDAPLKSDDSAKEPLAGGKLLVVYLCGSFDIIYGRLLQRKGH
F
MPPELLQSQFSILEPPSAPENFIQVSVDKSLPEITAAVMEALK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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