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Report for CCDS36644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36644.1 Public Mus musculus 13 Nol7 23 108 98 CCDS HistoryNCBI Gene:70078Re-query CCDS DB by CCDS ID:36644.1Re-query CCDS DB by GeneID:70078See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071926.4 ENSMUSP00000071818.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071926.4Link to Ensembl Protein Viewer:ENSMUSP00000071818.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071926Re-query CCDS DB by Protein ID:ENSMUSP00000071818
Original member Current member NCBI NM_023554.2 NP_076043.2 Accepted alive Link to Nucleotide Sequence:NM_023554.2Link to Protein Sequence:NP_076043.2Re-query CCDS DB by Nucleotide ID:NM_023554Re-query CCDS DB by Protein ID:NP_076043Link to BLAST:NP_076043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076043.2 254 Q9D7Z3-1 254 100% 0 0

Chromosomal Locations for CCDS 36644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43398405 43398658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43398735 43398795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43399511 43399569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43400593 43400621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43400853 43400934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43401297 43401418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43401500 43401577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43401762 43401841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGTGCAGCTCCGGCCCCGCTTGTCGCGTATTCCCGCGCCGGCTGAGGCGATGGTGGACGAGGACCAGG
CGGCCTCGGAGGAGGAGGAGGCGGAGCACGGCCTGCTGCTCGCGCAGCCTAGCAGTGGCGCGGCCGCCGA
GCCCCTGGACGAGGAGGAGGACGCGGACGACGAAGCCCCGGAGGAGCTGACTTTCGCCAGCGCCCAGGCG
GAAGCCCGGGAGGAGGAGCTGCGCGTGCGCGCGAGTGCTCGCAGGGATAAAACGCTGTTGAAGGAGAAGA
GGAAACGGCGCGAGGAGCTGTTCATCGAACAGAAGAAAAGAAAGCTGCTTCCAGATGCTGTATTAGAGCA
GCTAACTACAGCTTCAGAGGCCGACATAAAGAAATCACCAGAAAACGTAAAAGTTAATTTGAAAAAGAAA
AGTGAACAGCATGCAAAAGGAAGAAACTCCAAGAAAGTTAAAGTACAGAAAGTGCAGTCTGTCGGTCAGA
TTGAAAGCTACATGGCTGTAAGGCTTAAAGATGAAGATCTGAGAGATTCAAGGCAAGAGGCAGCCAAACA
CTTCATCCACAGTTGTTTATATGGTTCAGATTCCAAAAGGACTACTGTAAACAAGTTCCTGTCTCTGAAC
AACAAGAGGTCACCAGTGAAAAAGGCTGCAGCCCAGTTTCTGACTAGCACCTGGGGAGCTCAGAAACAAC
AAAATGCCAAGAGGTTTAAAAAACGGTGGATGGCCAAAAAGATGAAGAAGAAAACTTATAAGTGA

Translation (254 aa):
MVQLRPRLSRIPAPAEAMVDEDQAASEEEEAEHGLLLAQPSSGAAAEPLDEEEDADDEAPEELTFASAQA
EAREEELRVRASARRDKTLLKEKRKRREELFIEQKKRKLLPDAVLEQLTTASEADIKKSPENVKVNLKKK
SEQHAKGRNSKKVKVQKVQSVGQIESYMAVRLKDEDLRDSRQEAAKHFIHSCLYGSDSKRTTVNKFLSLN
NKRSPVKKAAAQFLTSTWGAQKQQNAKRFKKRWMAKKMKKKTYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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