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Report for CCDS36623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36623.1 Public Mus musculus 13 Ripor2 23 108 98 CCDS HistoryNCBI Gene:193385Re-query CCDS DB by CCDS ID:36623.1Re-query CCDS DB by GeneID:193385See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038477.6 ENSMUSP00000043663.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038477.6Link to Ensembl Protein Viewer:ENSMUSP00000043663.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038477Re-query CCDS DB by Protein ID:ENSMUSP00000043663
Original member Current member NCBI NM_001080381.1 NP_001073850.1 Accepted alive Link to Nucleotide Sequence:NM_001080381.1Link to Protein Sequence:NP_001073850.1Re-query CCDS DB by Nucleotide ID:NM_001080381Re-query CCDS DB by Protein ID:NP_001073850Link to BLAST:NP_001073850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073850.1 672 Q80U16-2 672 100% 0 0

Chromosomal Locations for CCDS 36623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24638888 24638936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24669960 24670086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24671755 24671910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24673032 24673110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24674647 24674670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24675775 24675828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24677724 24677873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24680628 24680691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24689466 24689509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24693766 24693891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24694117 24694265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24695573 24695702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24696471 24696596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24701062 24701730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24704770 24704841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGCCACCCGGTACTAAGCGTCTCCGGGCACTAGGAGCGTTCTCGGCAGGACTGCCAACCAGACTCCCAG
AAATCATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCTT
CGCAGGTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTC
AAGAAGCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGC
CTCAGCCGAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCA
CCAGACGGAGCTGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTG
TATGACCTAGACAAGCAAATTAAAACGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGG
TAGACGAGCTCTATGAAGCCTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGC
CTTCGCGACGTCCCCTGCCAGCAAGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAA
TACACGGAGAACATGTGTGCCATTGAAGCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGA
AAGGTCTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGTCGGCA
GAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGAGCTGGGATGGAGCAGAAACCGTCTTC
CTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAAGGACTGGCGACTCACATCCTGG
TAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGTGGTGGCTGTTGACATCAA
TGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGGAGGACACAACCCCA
TCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAGGGCACCCCAG
AAACACCTACCTTCAAAGACCAGTCCTTCTTTAGATGGTTGCGGCTGTCTGTCTTGAGTGCCTTGCGAGA
CACTTTCTTTGCCACGTTGCACCACAACCACTCTGTCGGTGACCTGCCTTCCCTCAGCCTGAACCCCAAG
GCCCTGCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCAGAGGAGAAAA
GGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTCCAGCTCAGCCACCTC
CCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTG
TCCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAGGACCATG
AGCCCAAGTCCCACCCAAAGAGTGATACGGTAGAGCCCGGGAAGCCGGGTGTGGCTACAAGGTCTGGTAC
CGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGGAATCGGATGAGGCCTCTGAGCTC
AAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACTGGTGAAGAGGCTCACCTCGGCTG
AGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAGCGAGTCTGAGGCTGGCCGGTC
CTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTAGACCCACACAAGAAGCAG
TACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAAAGATGCTAAACATC
TTGAGGATCAGAGACTCAATGATGCTGCTTCCCGGATGGAGATCACAGAGGGTGAATGA

Translation (672 aa):
MPPGTKRLRALGAFSAGLPTRLPEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENASAL
KKPQAKLKKMHNLGHKNNNTPKEPQPKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRLGVL
YDLDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLSEINRSYKE
YTENMCAIEAELESLLGEFSIKMKGLAGFARLCPGDQYEIFMKYGRQRWKLKGKIEVNGKQSWDGAETVF
LPLIVGFISIKVTELKGLATHILVGSVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVEDTTP
SSGPGNKTAALQRRMSMYSQGTPETPTFKDQSFFRWLRLSVLSALRDTFFATLHHNHSVGDLPSLSLNPK
ALLEFYSNLPDDIFESGKAAEEKRPLSLSFSDLQDGDCVFTSSSATSPSSSHSAHPEITITPAELTHSSL
SSQNEGTEDSSSASSRNSLGEDHEPKSHPKSDTVEPGKPGVATRSGTESLFLESSVAEALLQESDEASEL
KPVELDTFEGNITKQLVKRLTSAEGPVTTDKLFFEGSVGSESEAGRSFLDGSLEDAFNGLFLALDPHKKQ
YKEFQDLNQEVTHLDDVLKDAKHLEDQRLNDAASRMEITEGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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