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Report for CCDS36538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36538.1 Public Mus musculus 12 Serpina3m 23 108 98 CCDS HistoryNCBI Gene:20717Re-query CCDS DB by CCDS ID:36538.1Re-query CCDS DB by GeneID:20717See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101078.11 ENSMUSP00000098639.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101078.11Link to Ensembl Protein Viewer:ENSMUSP00000098639.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000101078Re-query CCDS DB by Protein ID:ENSMUSP00000098639
Original member Current member EBI ENSMUST00000168797.1 ENSMUSP00000130979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168797.1Link to Ensembl Protein Viewer:ENSMUSP00000130979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168797Re-query CCDS DB by Protein ID:ENSMUSP00000130979
Original member NCBI NM_009253.2 NP_033279.2 Updated not alive Link to Nucleotide Sequence:NM_009253.2Link to Protein Sequence:NP_033279.2Re-query CCDS DB by Nucleotide ID:NM_009253Re-query CCDS DB by Protein ID:NP_033279
Current member NCBI NM_009253.3 NP_033279.2 Accepted alive Link to Nucleotide Sequence:NM_009253.3Link to Protein Sequence:NP_033279.2Re-query CCDS DB by Nucleotide ID:NM_009253Re-query CCDS DB by Protein ID:NP_033279Link to BLAST:NP_033279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033279.2 418 Q03734 418 100% 0 0

Chromosomal Locations for CCDS 36538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104389076 104389712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104391456 104391729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104392642 104392792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104393733 104393927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCTTCATTGCAGCTCTAGGGATCTTAATGGCTGGGATCTGTCCTACTGTCCTCTGCTTCTCAGATG
ACACATGGGGAATAGATATTCTATTACATAAAAACCAAGAAAGTGGGACACCAGATGACAGTCTCACATT
GGCGTCCATCAACACTGACTTTGCCTTCAGCCTGTACAAGAAGATGGCTTTGAAGAATCCAGATAAAAAT
ATTGTCTTCTCCCCACTTAGCATCTCAGCTGCCTTGGCCCTCGTGTCCCTGGGAGCAAAGGGCAACACCC
TGGAAGAGATTTTAGAAGGTCTCAAGTTCAATCTCACAGAGACCTCTGAAGCAGACATCCACCAGGGCTT
TGGGCACCTCCTACAGAGGCTCAGCCAGCCAGAAGACCAGGATCAGATAAACATAGGCAATGCCATGTTT
ATTGAAAAGGACCTGCAGATCCTGGCAGAATTCCATGAGAAGACAAGGGCTCTGTACCAGACTGAGGCCT
TCACAGCAGACTTCCAGCAGCCTACTGAGGCCACAAAGCTCATCAATGACTATGTGAGCAATCAGACCCA
GGGGATGATCAAGAAACTGATCTCAGAACTGGATGATAGGACATTGATGGTGCTGGTGAATTACATCTAC
TTTAAAGGCAAATGGAAGATATCCTTTGACCCCCAGGACACATTTGAGTCTGAGTTCTACTTGGATGAGA
AGAGATCTGTGAAGGTTCCCATGATGAAAATGAAGTTTCTGACCACACGCCACTTCCGTGATGAGGAGCT
GTCCTGCTCTGTGTTGGAGCTGAAGTACACAGGAAATGCCAGCGCCCTGTTCATCCTCCCTGACCAGGGC
AGGATGCAGCAGGTGGAAGCCAGCTTACAACCAGAGACCCTGAGGAAATGGTGGAAATCTTTGAAAACCA
GGAAAATAGGTGAGCTCTACCTGCCCAAGTTCTCCATCTCTACTGACTACAACCTGAAGGACATCCTTCC
AGAGCTGGGCATTAAAGAAATCTTCTCCAAACAAGCTGACCTATCTGGGATCACAGGAACCAAGGACCTG
AGTGTGTCTCAGGTGGTCCACAAGGCTGTGCTGGACGTGGCTGAGACAGGCACAGAAGCAGCTGCTGCCA
CAGGGTTCATTTTTGGCTTTCGTTCTAGAAGATTACAAACTATGACTGTGCAGTTCAACAGGCCATTCCT
GATGGTCATCTCTCACACAGGTGTTCAGACTACCCTCTTTATGGCCAAAGTCACTAACCCCAAGTGA

Translation (418 aa):
MAFIAALGILMAGICPTVLCFSDDTWGIDILLHKNQESGTPDDSLTLASINTDFAFSLYKKMALKNPDKN
IVFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQRLSQPEDQDQINIGNAMF
IEKDLQILAEFHEKTRALYQTEAFTADFQQPTEATKLINDYVSNQTQGMIKKLISELDDRTLMVLVNYIY
FKGKWKISFDPQDTFESEFYLDEKRSVKVPMMKMKFLTTRHFRDEELSCSVLELKYTGNASALFILPDQG
RMQQVEASLQPETLRKWWKSLKTRKIGELYLPKFSISTDYNLKDILPELGIKEIFSKQADLSGITGTKDL
SVSQVVHKAVLDVAETGTEAAAATGFIFGFRSRRLQTMTVQFNRPFLMVISHTGVQTTLFMAKVTNPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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