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Report for CCDS36524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36524.1 Public Mus musculus 12 Tc2n 23 108 98 CCDS HistoryNCBI Gene:74413Re-query CCDS DB by CCDS ID:36524.1Re-query CCDS DB by GeneID:74413See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110047.8 ENSMUSP00000105674.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110047.8Link to Ensembl Protein Viewer:ENSMUSP00000105674.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110047Re-query CCDS DB by Protein ID:ENSMUSP00000105674
Original member Current member EBI ENSMUST00000160830.1 ENSMUSP00000124287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160830.1Link to Ensembl Protein Viewer:ENSMUSP00000124287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160830Re-query CCDS DB by Protein ID:ENSMUSP00000124287
Original member Current member EBI ENSMUST00000162735.7 ENSMUSP00000125288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162735.7Link to Ensembl Protein Viewer:ENSMUSP00000125288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162735Re-query CCDS DB by Protein ID:ENSMUSP00000125288
Original member Current member NCBI NM_001082976.2 NP_001076445.1 Accepted alive Link to Nucleotide Sequence:NM_001082976.2Link to Protein Sequence:NP_001076445.1Re-query CCDS DB by Nucleotide ID:NM_001082976Re-query CCDS DB by Protein ID:NP_001076445Link to BLAST:NP_001076445.1
Original member Current member NCBI NM_028924.3 NP_083200.1 Accepted alive Link to Nucleotide Sequence:NM_028924.3Link to Protein Sequence:NP_083200.1Re-query CCDS DB by Nucleotide ID:NM_028924Re-query CCDS DB by Protein ID:NP_083200Link to BLAST:NP_083200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076445.1 489 Q91XT6 489 100% 0 0
NP_083200.1 489 Q91XT6 489 100% 0 0

Chromosomal Locations for CCDS 36524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 101649095 101649205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101650992 101651191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101652739 101652853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101665553 101665744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101678514 101678630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101688960 101689060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101689777 101689852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101693115 101693206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101694506 101694673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101706383 101706613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101709424 101709490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGCAGCAGAATTTATAAAGAGTTGCTGTAGAGGATGTCTCTATGGTGAAACAGAAAAGCAGAAGTTTT
CTGTGGACAGAGACTTTAAAGCATCAGCCTCAAGTAGCCAAAATACCATTGGTATCCCTCCATTGACTTC
TGTTCTAGTAAAGCCTCAAGTTGGCTGTAATGAAGATTATTTGCTTTCCAAATTACCATGTGATGGTAAA
GAAGTACAATTTGTGGTGCCCAGGTTTAAATTATCTTATATTCAGCCTAGGACACAAGGAATTCCTTCAC
ATCTGGATGAACTGGAAGGATCTGCTAGAGCATCTTTTGGAGATCAAAAGACAGAACTTTGTAGTTCATT
CTACCATGGACCCAGCTATGATGTGTATAATCCATGCTATATGTATCAACACTTTTCACCTGATTTAAGT
AGGCGCTTTCTTCCTCATTGTGAAACAAAACAGTTATATGGATCTGTTTGTGATTTAAGGACCAGTAAAC
TTCCTGGTTCCTCTGGGCTAAGCAAATCTATGCTTGATCTTACAACTTCATCTCAGCGATTCATCCAGAG
ACATGACTCATTTTCCAGTGTTCCTAGTAGTTCTTCTTCAAGAAAAAATTCTCAGGGCAGTAACAGAAGC
CTGGATACAATTACCCTATCAGGAGATGAAAGAGACTTGGGGAGATTGAATGTGAAATTATTTTATAATT
CTTCAGCAGAGCAGATCTGGATCACAGTTTTGCAGTGCAGAGATATAAGTTGGCCCTCTAGTTATGGAGA
CACTCCCACAATTTCTATAAAAGGAATTTTAACATTGTCCAAACCAGTGCATTTCAAATCTTCAGCCAAA
GAAGGTTCCAATGCTATTGAATTTATGGAAACATTTGTATTTGCTATTAAACTACAAAATCTCCAAGCTG
TGAGACTTGCATTTAAGATTCAAACCCAGACTCCCAAGAAGAAAACCATTGGAGAGTGTTCTCTTTCACT
CAGAACTCTTAGTACCCAGGAAATGGAGTACTCGTTGGAAATAATAGCACCTTCAAAAATTTCTGTTTGC
CAAGCAGAACTTGAACTGGGGACTTGTTTTCAAGCAGTAAATAGCAGGATTCAGCTGCAAATTCTTGAGG
CACAATACCTTCCAAGTTCATCAACACCTTTGACTTTGAGTTTTTTTGTGAAAGTGGGGATGTTTAGCTC
AGGAGAGCTGATTTACAAGAAGAAGACACGCTTATTGAAGGCCTCCAGTGGAAGAGTAAAATGGGGAGAA
ACTATGATTTTTCCACTTATACAGACTGAAAAAGAAATTGTTTTTCTTATTAAACTTTATAGTCGGAGCT
CTGTAAGAAGAAAACATTTTGTAGGCCAGCTCTGGATAAGTGAAGACAGTAATAATATTGAAGCAGTGAA
TCAATGGAAAGAGACCATTACAAATCCGGAAAAGGTTGTTATCAAGTGGCACAAGTTAAATCCATCTTGA

Translation (489 aa):
MAAEFIKSCCRGCLYGETEKQKFSVDRDFKASASSSQNTIGIPPLTSVLVKPQVGCNEDYLLSKLPCDGK
EVQFVVPRFKLSYIQPRTQGIPSHLDELEGSARASFGDQKTELCSSFYHGPSYDVYNPCYMYQHFSPDLS
RRFLPHCETKQLYGSVCDLRTSKLPGSSGLSKSMLDLTTSSQRFIQRHDSFSSVPSSSSSRKNSQGSNRS
LDTITLSGDERDLGRLNVKLFYNSSAEQIWITVLQCRDISWPSSYGDTPTISIKGILTLSKPVHFKSSAK
EGSNAIEFMETFVFAIKLQNLQAVRLAFKIQTQTPKKKTIGECSLSLRTLSTQEMEYSLEIIAPSKISVC
QAELELGTCFQAVNSRIQLQILEAQYLPSSSTPLTLSFFVKVGMFSSGELIYKKKTRLLKASSGRVKWGE
TMIFPLIQTEKEIVFLIKLYSRSSVRRKHFVGQLWISEDSNNIEAVNQWKETITNPEKVVIKWHKLNPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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