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Report for CCDS36480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36480.1 Public Mus musculus 12 Rdh11 23 108 98 CCDS HistoryNCBI Gene:17252Re-query CCDS DB by CCDS ID:36480.1Re-query CCDS DB by GeneID:17252See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161204.7 ENSMUSP00000124066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161204.7Link to Ensembl Protein Viewer:ENSMUSP00000124066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161204Re-query CCDS DB by Protein ID:ENSMUSP00000124066
Original member Current member NCBI NM_021557.6 NP_067532.2 Accepted alive Link to Nucleotide Sequence:NM_021557.6Link to Protein Sequence:NP_067532.2Re-query CCDS DB by Nucleotide ID:NM_021557Re-query CCDS DB by Protein ID:NP_067532Link to BLAST:NP_067532.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067532.2 316 Q9QYF1-1 316 100% 0 0

Chromosomal Locations for CCDS 36480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79176145 79176250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79182653 79182842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79185124 79185333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79186414 79186518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79188481 79188636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79188989 79189107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79191726 79191790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTTCGGATTCCTGCTTCTGCTCTCTCTTCCCTTCATCCTGTACTTGGTCACGCCAAAAATCAGGAAAA
TGCTGTCCAGTGGGGTGTGCACATCTAATGTTCAGCTTCCCGGGAAGGTAGCCATAGTCACTGGTGCTAA
CACAGGCATTGGGAAGGAGACAGCTAAAGATCTGGCCCAAAGAGGAGCCCGTGTGTATTTAGCTTGCCGG
GATGTGGACAAGGGGGAACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAGTCAGGTCTTCGTAC
GGAAACTGGACCTAGCTGATACCAAGTCTATTCGAGCCTTTGCCAAAGACTTCTTAGCTGAGGAAAAGCA
TCTGCACCTTCTCATCAACAATGCGGGCGTGATGATGTGCCCCTACTCGAAGACTGCAGACGGCTTTGAG
ATGCACATTGGCGTCAACCACCTGGGTCACTTCCTCCTGACCCATTTGCTGCTAGAAAAGCTGAAGGAGT
CGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATAACCT
GCAGGGGGAGAAGTTCTACAGTGCGGGTCTCGCGTACTGCCACAGCAAACTAGCCAACATTCTCTTCACT
AAGGAGCTGGCCAAGAGGCTGAAAGGTTCTGGAGTGACAACATACTCTGTACACCCTGGCACAGTCCATT
CTGAATTGACGCGGTACTCCTCTATTATGAGATGGCTTTGGCAACTTTTCTTTGTTTTCATCAAGACCCC
TCAAGAGGGAGCTCAGACGAGCCTGTACTGTGCCCTGACAGAAGGTCTCGAGAGCCTAAGTGGCAGTCAT
TTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCAGGCGGCTGTGGG
ATGTCAGCTGTGACCTGCTGGGCCTCCCAGTGGATTGGTAA

Translation (316 aa):
MFGFLLLLSLPFILYLVTPKIRKMLSSGVCTSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACR
DVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFE
MHIGVNHLGHFLLTHLLLEKLKESAPSRIVNLSSLGHHLGRIHFHNLQGEKFYSAGLAYCHSKLANILFT
KELAKRLKGSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFVFIKTPQEGAQTSLYCALTEGLESLSGSH
FSDCQLAWVSYQGRNEIIARRLWDVSCDLLGLPVDW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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