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Report for CCDS36471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36471.1 Public Mus musculus 12 Arid4a 23 108 98 CCDS HistoryNCBI Gene:238247Re-query CCDS DB by CCDS ID:36471.1Re-query CCDS DB by GeneID:238247See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046305.11 ENSMUSP00000035512.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046305.11Link to Ensembl Protein Viewer:ENSMUSP00000035512.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046305Re-query CCDS DB by Protein ID:ENSMUSP00000035512
Original member Current member NCBI NM_001081195.1 NP_001074664.1 Accepted alive Link to Nucleotide Sequence:NM_001081195.1Link to Protein Sequence:NP_001074664.1Re-query CCDS DB by Nucleotide ID:NM_001081195Re-query CCDS DB by Protein ID:NP_001074664Link to BLAST:NP_001074664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074664.1 1261 F8VPQ2 1261 100% 0 0

Chromosomal Locations for CCDS 36471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71017143 71017148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71019374 71019484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71022193 71022258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71023500 71023590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71037110 71037189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71037271 71037365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71039839 71039971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71045024 71045103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71046114 71046190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71047194 71047360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71060062 71060134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71061282 71061376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71061531 71061628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71063093 71063324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71067079 71067338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71069834 71070031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71071808 71071892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71072590 71072731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71074936 71076069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71076443 71076547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71086455 71086661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71087461 71087607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71097501 71097604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3786 nt):
ATGAAGGCGGCAGATGAGCCTGCCTACCTGACAGTGGGAACTGATGTCAGTGCCAAGTACCGAGGGGCCT
TCTGTGAGGCAAAGATCAAGACTGTGAAAAGGCTGGTGAAAGTCAAGGTACTTCTGAAGCAGGATAACAC
AACACAGTTGGTGCAAGATGACCAAGTAAAGGGCCCTTTAAGAGTTGGAGCTATTGTAGAAACAAGGACA
TCTGATGGATCTATCCAGGAAGCTATTATCAGCAAATTGACAGATGCTAGTTGGTATACTGTGGTGTTTG
ATGACGGTGATGAGAGAACTCTGAGGCGGACCTCACTTTGCCTGAAAGGGGAGAGACATTTTGCCGAGAG
TGAGACTCTGGATCAGCTTCCTCTAACAAACCCAGAGCATTTTGGGACGCCAGTCATTGCAAAGAAGACC
AACAGAGGGAGGAGGTCCTCACTGCCTATCACTGAAGACGAAAAGGAAGAAGAAAGCAGCGAAGAGGAAG
ATGAAGATAAGAGGCGTCTCAATGACGAATTATTAGGAAAAGTTGTAAGTGTGGCCTCCACAGCAGAGAG
CACTGGATGGTACCCTGCTTTGGTTGTCTCTCCCAGCTGCAATGATGACGTCACAGTGAAAAAAGATCAG
TGTTTAGTTCGATCATTTATTGATTCTAAATTTTATTCTATAGCAAGAAAGGACATTAAGGAACTGGACA
TTCTCACTCTACCAGAATCTGAGCTCTGTGCTAGGCCAGGGCTGCGAAGAGCAAGTGTCTTCCTAAAAGG
TAGGATTGTTCCTGATAATTGGAAAATGGATATAAGTGAAATCCTTGAGTCCTCCAGCAGTGATGACGAA
GAATGCCCAGCTGAGGAACATGAAGAGGAGAAGGAAAAAGAGGCCAAAAAGGAGGAAGAAGAGCTGCCTG
AGGAAGAGCTTGATCCTGAGGAGAGGGACAATTTCCTCCAACAGCTTTATAAGTTTATGGAAGACAGAGG
TACTCCGATCAACAAACCACCTGTTTTGGGCTATAAAGATCTCAATCTCTTCAAACTCTTTAGACTGGTC
TATCATCAGGGGGGATGTGGCAATATTGACAGTGGTGCTGTATGGAAGCAAATTTATATGGACCTTGGCA
TTCCAATTTTGAATTCAGCTGCTTCCTACAATGTAAAAACTGCTTATAGAAAATATCTCTATGGTTTTGA
GGAGTACTGCCGTTCTGCAAATATTCAGTTCAGAACTATTCACCACCATGAACCAAAAGTAAAAGAGGAA
AAAAAAGACTTTGAAGACTCAATGGACGAAGCTCTAAAAGAGGCCCCGGAAATGCCTTTGCTGGACGTGA
AGAGTGAGCCCGAGGAGAATACGGACTCAAACAGTGAAAGCGACAGAGAAGACACAGAGCTAAAGTCGCC
AAGAGGGAGAAGGAAAATTGTTCGAGATGCAAACTGTATCAAGAAGGAAATAGAGGAAGAGAAAATCGAA
GACAAATTCCTCCGAGATGATTTAGAAAATAAGGACGCAGGTGATGACGATGACGATGGCGACCCAGCAG
CGAAGAGAGAGCATGAGCTGCTGTTCGGGAGGAAGAGCACACCAAAGAACAAAGAGAAGAAGATTAAAAA
GCCAGAGGACTCTGAGAGAGACTCAGATGAAGAGGAAGAGAAGAGCCAAGAGAGGGAAGAGACTGAGAGC
CGGTGTGACTCGGAAGGGGAGGACGAGGAGGACGACACAGAGCCCTGCCTGACGGGAACCAAAGTGAAGG
TCAAGTACGGACGAGGAAAAACTCAGAAAATTTATGAAGCCAGCATCAAAAGCACGGAGATGGACGACGG
GGAGATTCTGTACCTAGTGCACTACTACGGATGGAACGTCAGATATGATGAATGGGTAAAAGCTGACAGG
ATAATCTGGCCCTTGGACAAAGGTGGACCAAAGAAAAAACAAAAGAAGAAAGTTAAGAATAAAGAAGATA
GTGAAAAGGACGAAAAGAGGGATGAAGAGAGGCAGAAGTCCAAACGGGGAAGACCACCTTTAAAATCTAC
TTTTTCGCCAAACATGCCATACAGTTTATCTAAGACGTCAAACAGTGAAGGAAAATCAGACTCCTGTTCA
TCTGATAGTGAGGCAGACGACCAGCTGGAGAAGAGCTCAGGGGGTGAAGATCTTTCTCCTGATGTCAAAG
AAGAATTGGAAAAAAATGAAAATGCACATGATGATAAACTAGATGAAGAAAACCCAAAGATTGTACATAT
ATCAAAAGAAAACGACAGGACTCAGGCACAGCCCTCAGACACCCTGACGGTGGAGGCAGGGGACAGCGAT
CAAATTGTGCATATTTTTGGAGACAAAGTGGACCAAGTAGAAGAATTTAAGAAACAGGTGGAAAAGTCTC
CCAAAGGGAAGGGAAGGCGCAGCAAGACAAAAGACCTTTCGTTAGAACTTATAAAGATTTCACCTTTCGG
CCAGGAGGAAGCAGGCAGCGAAGCTCATGGGGACGTTCATAGCCTGGAGTTTTCTTCACTAGAATGTAAA
AACTTTTCTTCTACTGAAGATGACATCGACCCATATGAGAAAGAAAAAAAGTTGAAACGAAAAATCCTGG
GACAGCAATCCCCAGAAAAAAAATTGAGACTTGATAATGGCATGGAAATGACAACTGGAGTGTCCCAAGA
GAGGTCTGACGATGGCGCGGGAGCCGAGGGCATGAAAGGCGCACACGTGGAACAGCACTTTGAAACAGAA
GGTGAAGGGATGCCATCGCTGACAGCCGAGCCCGACCAGGGCCTTCAAGAACTGACTAGTGAGAAATCGG
ACAGTCCAGCCGAAGAAGAACCGGTGCACACGCCACTCAAAGAAGAGGAGGATGCGATGCCTCTGATCGG
GCCTGAAACCTTGGTTTGCCATGAGGTAGACCTGGATGATTTAGATGAGAAGGATAAGACCAGTATTGAG
GATGTGGTAGTAGAAGGCTCTGAGTCTAACTCTCTGGCTTCCGTACCACCTGCCTTACCTCCTGTAGCAC
AGCATAACTTTTCCGTAGCTTCCCCACTCACTCTCAGCCAAGACGAGTCCCGAAGTATAAAGAGTGAGAG
TGACATTACAATTGAAGTTGATAGCATCGCCGAAGAATCACAAGAAGGCCTCTGTGAGAGGGAATCGGCG
AACGGGTTTGAAGCCAGTGTTGCCTCTGGTGCCTGTAGTATAATTGCACACGAGCGAGAGAGCAGAGAGA
AGGGTCAGAAAAGGCCAAGCGATGGAAATAGTGGATTAATTGCAAAAAAGCAAAAGCGAACCCCAAAGCG
GACAAGTGCTGCAGCCAAAACTGAAAAGAACGGAGCAGGACAGAGCAGTGACAGCGAGGACCTCCCCGCC
ATGGACAGCTCCAGTAACTGCACCCCAGTGAAGCGCCTTACCCTGCCCAAGTCACAGAAGCTGCCACGGT
CTCCTGCAAGAACCTCGCCTCACATCAAAGATGCAGAGAAGGAGAAGCACCGAGAGAAGCATCCGAACTC
CTCCCCCAGGACATACAAGTGGAGCTTCCAGCTCAATGAATTAGATAATATGAACAGTACAGAGAGAATC
TCTTTTCTCCAAGAAAAACTACAGGAAATCAGAAAATACTACATGTCTTTGAAGTCTGAAGTTGCAACCA
TCGACAGAAGGAGGAAAAGATTGAAAAAGAAAGACAGAGAAGTGTCTCACGCAGGAGCGTCAATGTCCTC
TGCTTCATCAGACACTGGAATGAGCCCTTCTTCATCGTCTCCCCCCCAAAATGTACTTGCTGTAGAGTGC
AGGTGA

Translation (1261 aa):
MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPLRVGAIVETRT
SDGSIQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETLDQLPLTNPEHFGTPVIAKKT
NRGRRSSLPITEDEKEEESSEEEDEDKRRLNDELLGKVVSVASTAESTGWYPALVVSPSCNDDVTVKKDQ
CLVRSFIDSKFYSIARKDIKELDILTLPESELCARPGLRRASVFLKGRIVPDNWKMDISEILESSSSDDE
ECPAEEHEEEKEKEAKKEEEELPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLV
YHQGGCGNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTIHHHEPKVKEE
KKDFEDSMDEALKEAPEMPLLDVKSEPEENTDSNSESDREDTELKSPRGRRKIVRDANCIKKEIEEEKIE
DKFLRDDLENKDAGDDDDDGDPAAKREHELLFGRKSTPKNKEKKIKKPEDSERDSDEEEEKSQEREETES
RCDSEGEDEEDDTEPCLTGTKVKVKYGRGKTQKIYEASIKSTEMDDGEILYLVHYYGWNVRYDEWVKADR
IIWPLDKGGPKKKQKKKVKNKEDSEKDEKRDEERQKSKRGRPPLKSTFSPNMPYSLSKTSNSEGKSDSCS
SDSEADDQLEKSSGGEDLSPDVKEELEKNENAHDDKLDEENPKIVHISKENDRTQAQPSDTLTVEAGDSD
QIVHIFGDKVDQVEEFKKQVEKSPKGKGRRSKTKDLSLELIKISPFGQEEAGSEAHGDVHSLEFSSLECK
NFSSTEDDIDPYEKEKKLKRKILGQQSPEKKLRLDNGMEMTTGVSQERSDDGAGAEGMKGAHVEQHFETE
GEGMPSLTAEPDQGLQELTSEKSDSPAEEEPVHTPLKEEEDAMPLIGPETLVCHEVDLDDLDEKDKTSIE
DVVVEGSESNSLASVPPALPPVAQHNFSVASPLTLSQDESRSIKSESDITIEVDSIAEESQEGLCERESA
NGFEASVASGACSIIAHERESREKGQKRPSDGNSGLIAKKQKRTPKRTSAAAKTEKNGAGQSSDSEDLPA
MDSSSNCTPVKRLTLPKSQKLPRSPARTSPHIKDAEKEKHREKHPNSSPRTYKWSFQLNELDNMNSTERI
SFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMSPSSSSPPQNVLAVEC
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Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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