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Report for CCDS3640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3640.1 Public Homo sapiens 4 HPGDS 24 110 108 CCDS HistoryNCBI Gene:27306Re-query CCDS DB by CCDS ID:3640.1Re-query CCDS DB by GeneID:27306See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3640.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295256.10 ENSP00000295256.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295256.10Link to Ensembl Protein Viewer:ENSP00000295256.5Re-query CCDS DB by Nucleotide ID:ENST00000295256Re-query CCDS DB by Protein ID:ENSP00000295256
Original member Current member NCBI NM_014485.3 NP_055300.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014485.3Link to Protein Sequence:NP_055300.1Re-query CCDS DB by Nucleotide ID:NM_014485Re-query CCDS DB by Protein ID:NP_055300Link to BLAST:NP_055300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055300.1 199 O60760 199 100% 0 0

Chromosomal Locations for CCDS 3640.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94299480 94299644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94302146 94302244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94308634 94308743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94317873 94317965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94334497 94334629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGCCAAACTACAAACTCACTTATTTTAATATGAGGGGGAGAGCAGAAATTATTCGTTACATATTTGCTT
ATTTGGACATACAGTATGAAGACCACAGAATAGAACAAGCTGACTGGCCTGAAATCAAATCAACTCTCCC
ATTTGGAAAAATCCCCATTTTGGAAGTTGATGGACTTACTCTTCACCAGAGCCTAGCAATAGCAAGATAT
TTGACCAAAAACACAGATTTGGCTGGAAACACAGAAATGGAACAATGTCATGTTGATGCTATTGTGGACA
CTCTGGATGATTTCATGTCATGTTTTCCTTGGGCAGAGAAAAAGCAAGATGTGAAAGAGCAGATGTTCAA
TGAGCTGCTCACGTATAATGCGCCTCATCTTATGCAAGACTTGGACACATATTTAGGGGGGAGAGAATGG
CTTATTGGTAACTCTGTAACTTGGGCAGACTTCTACTGGGAGATTTGCAGTACCACACTTTTGGTCTTTA
AGCCTGACCTGTTAGACAACCATCCAAGGCTGGTGACTTTACGGAAGAAAGTCCAAGCCATTCCTGCCGT
CGCTAACTGGATAAAACGAAGGCCCCAAACCAAACTCTAG

Translation (199 aa):
MPNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARY
LTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREW
LIGNSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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