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Report for CCDS36386.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36386.2 Public Mus musculus 11 Cep131 23 108 98 CCDS HistoryNCBI Gene:12009Re-query CCDS DB by CCDS ID:36386.2Re-query CCDS DB by GeneID:12009See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 36386.2
The coding region has been updated to represent alternative splice sites at the exon 9-10 splice junction. The update is supported by transcripts that support the reference genome allele, which lacks a TAC triplet in exon 10.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36386.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106227.7 ENSMUSP00000101834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106227.7Link to Ensembl Protein Viewer:ENSMUSP00000101834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106227Re-query CCDS DB by Protein ID:ENSMUSP00000101834
Original member NCBI NM_009734.3 NP_033864.3 Updated not alive Link to Nucleotide Sequence:NM_009734.3Link to Protein Sequence:NP_033864.3Re-query CCDS DB by Nucleotide ID:NM_009734Re-query CCDS DB by Protein ID:NP_033864
Current member NCBI NM_009734.4 NP_033864.3 Accepted alive Link to Nucleotide Sequence:NM_009734.4Link to Protein Sequence:NP_033864.3Re-query CCDS DB by Nucleotide ID:NM_009734Re-query CCDS DB by Protein ID:NP_033864Link to BLAST:NP_033864.3

Chromosomal Locations for CCDS 36386.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120064635 120064709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120064785 120064845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120065388 120065551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120065638 120065815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120065911 120066053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120066694 120066768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120066921 120067038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120067130 120067237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120067946 120068147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120068698 120068800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120070289 120070405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120070485 120070610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120070792 120070902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120071359 120071535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120071877 120072059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120072410 120072504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120072838 120072976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120073128 120073244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120073741 120073858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120075564 120075710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120076089 120076202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120076919 120077040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120077327 120077441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120081244 120081338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120083796 120083972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3180 nt):
ATGAAAGGTTCACGGACCATCACTGCCACTCCTGAAGGCAGTCCAGAAGCTGTGGACTTGAGTCTGATTG
GCCTCCCTCCGCCCATGTCCCAGCGGCCCGGCAGTGCCTCTGCCACAAGGTCTATTTTCCGTTCCATGTC
TGTGGCTACAGGCAGCGAGCCAAGAAAAAAGGCACTGGAGGCCACTGGACCTGGAGGCCCCCGAGCTATC
AACAATCTTCGAAGATCTAACAGCACTACACAGGTCAACCAGTCATGGACGGGCTCCCCCAGGCCAGCAG
AGCCCACCGACTTCCTGATGCTCTTTGAGGGCAGCACCAGTGGGAGAAGAAGGGTGGCCAGTCTTAGCAA
GGCATCCAGTGAGAAGGAAGCCACGTGGAACGTCCTGGATGAGCAGCCCAGGGGCTTGGCTTTGCCAGCC
AGTGCTCAGAGTCCCAGCACCCTTGACTCTGCCTTGGGCCCACGGAGGAAGGAGTGTCCTCTGGCACCCA
GCTTCACCGCTAACAACAGGAGCAACAAAGGTGCTGTGGGCAACTGTGTCACCACCATGGTGCATAACCA
CTATGCCTCCTCGAAGATGGTGTCGCCCCCCAAGAGCTCCAACCAGACAGCCCCCTCCCTCAACAATATT
GTGAAGGCAGCAGCCCGTGAGGGAGGTGAGGGCAGCGACTTGGGGAAGCCTCGGAAGAATTTGTCCAGTG
CCAGTCAGTCCGCTCGAGGCACTACCGGCCTGCTGAGGCGGAGGGAGGTGACTGAAGAGGAAGCCGAGAG
GTTCATCCATCAGGTAAACCAGGCTGCAGTTACCATCCAGCGCTGGTACCGCTGCCAGGTACAGAGGCGC
CGAGCGGGAGCAGCAGCCCTCGAGCACCTGCTAGCGTCCAAGCGAGAGGGGCAGAGGCAACGGTTGGGAG
GTGGGAACCTTCTGGAACTGCACCGGCAGGAGGAGGCAGCAAGGAAGAAGGCCCGGGAGGAAAAGGCTCG
TCAGGCCAGGCAGGCAGCCATTCAGGAACAACAGAAACGAGCCCAGAAGGCAAGTGAGGCCGAACACAGA
CGGCCTAAGGACAGACCAGAGACCCGAGCACCGGAGCAGCCTCGACCCATGCAGGAGCCAGGCTGCGTCA
CACACCCTAAGGCCAACAACGCTGGTGCCAGCATCTACCCCACAGGCCCCGCGGACCCCTGCCCTCCTGC
CTCTGAATCATCTCCAGAGCAATGGCAGTCTCCAGAGGACAAGCCACAGGACATCCATTCCCAGGGGGAA
GCCAGACAAGACCTGGCAGTGTCAGGCTCTTCCAGGGGCAAGGCCAGGGCCAGAGCAACCCTGGACGATC
TTCTGGACACACTGAAGCTGCTGGAGGAGGAGCCAGAGCCGCTGCCTCACCCCAAGGCCTACCATAAGGA
CAGATATGCCTGGACTGACGAGGAAGAGGATGCCAACTCCCTGACAGCTGACAACCTGGAGAAGTTTGGG
AAACTCAGCGCAGCCCCTGGCCCCCCTGATGACGGGACCCTGCTCTCGGAGGCCAAGCTTCAGAGCATTA
TGACCTTCCTGGATGAGATGGAGAAGTCAGGACAGGAGCGGCCAGCACCCTGGCGGGAGAGCCTGGTGCT
AGAGGCGGGCTCAGGATCCGAGGGAAGCACGTCTGTGATGCGGCTGAAGCTGGAGCTGGAGGAGAAGAAA
CAGGCCATGGCTCTGCTGCAGAGAGCTCTGGCGCAACAGCGTGACCTCACTGTTCGACGTGTTAAGGAGA
CAGAGAAGGAGCTGACCCGGCAGCTGCGGCAGCAGAAGGAGCAGTATGAGGCCACCATCCAACGGCACTT
GTCCTTCATTGACCAGCTGATTGAAGACAAGAAAGTTCTGAGCGAGAAGTGTGAGGCAGTGGTGGCCGAG
CTGAAGCACGGGGACCAGCGGTGTCGGGAGCGCGTGGCCCAGATGCAGGAGCAGCACGAACTGGAGATCA
AGAAACTCAAAGAACTCATGAGTGCCACCGAGAAAATCCGGCGTGAGAAGTGGATCAATGAGAAAACGAA
GAAGATCAAGGAAATCACAGTCAGAGGTCTAGAGCCTGAGATCCAGAAACTAATTGCCAAGCACAAGCAA
GAGGTGAGGCGGCTCAGGGGCCTGCACGAGGCTGAGCTGCAGCAGCGTGAAGAGCAGGCCGCACAGCGCC
ACCTGCGTCAGGCGGAAGAGCTGCGGCAGCACCTGGACCGGGAGAGGGAGGTGCTGGGCCAGCAGGAGCG
GGAGCGCGCCCAGCAGAGGTTTGAGCAGCACCTGGAGCAGGAACAGAGGGCACTGGAGCAGCAGCGGCGG
CGACTCTACAATGAGGTGGCCGAGGAGAAGGAGCGACTGGGCCAGCAGGCAGCCAGGCAGCGGGCAGAGT
TGGAGGAGCTGAGGCAGCAGCTGGAGGAGAGCAGCGCGGCCCTGACTCGGGCCCTGAGAGCCGAGTTCGA
GAGGAGCCGAGAGGAGCAGGAGCGGAGGCACCAGATGGAGCTGAAGGCCCTGAAGGACCAGCTGGAAGCT
GAGAGACAGGCGTGGGTGGCCAGCTGTGCCAAGAAGGAGGAAGCATGGCTGCTGACCAGGGAACGTGAGC
TGAAGGAAGAGATCCGAAAAGGCCGAGACCAGGAGATTGAGTTGGTCATCCACCGGCTGGAGGCCGATAT
GACACTGGCCAAGGAGGAGAGCGAGAGAGCAGCCGAGAGCCGTGTGAAGCGTGTGCGTGATAAGTATGAA
ACAGAGCTCTCGGAGCTGGAGCAGTCGGAGCGGAAGCTTCAGGAGCGGTGCTCGGAGCTGAAAGGCCGCC
TGGGGGAGGCCGAAGGGGAGAAGGAGCGGCTGCAGTCCCTAGTAAGGCAGAAGGAGAAGGAACTAGAAGA
CCTGCGGGCGGTGAACACACAGATGTGCAGTGAGCGGGCCAGCCTGGCCCAGGTGGTACGGCAGGAGTTT
GCAGAGCAGCTGGCAGCCTCCCAGGAGGAGACCCAGAGGGTGAAAGTGGAGCTCGCAGAGCTGCAGGCCC
GCCAGCAGGTGGAGCTAGACGAGGTGCACCGGAGGGTGAAGACGGCTCTAGCGAGGAAGGAGGCAGCCGT
GAACAGTCTCCGCAAACAGCATGAGGCTGCTGTGAAGCGGGCGGACCACCTAGAGGAACTGCTGGAGCAA
CACAAAGGGTCATCTCTGAGTTCTAAGTGA

Translation (1059 aa):
MKGSRTITATPEGSPEAVDLSLIGLPPPMSQRPGSASATRSIFRSMSVATGSEPRKKALEATGPGGPRAI
NNLRRSNSTTQVNQSWTGSPRPAEPTDFLMLFEGSTSGRRRVASLSKASSEKEATWNVLDEQPRGLALPA
SAQSPSTLDSALGPRRKECPLAPSFTANNRSNKGAVGNCVTTMVHNHYASSKMVSPPKSSNQTAPSLNNI
VKAAAREGGEGSDLGKPRKNLSSASQSARGTTGLLRRREVTEEEAERFIHQVNQAAVTIQRWYRCQVQRR
RAGAAALEHLLASKREGQRQRLGGGNLLELHRQEEAARKKAREEKARQARQAAIQEQQKRAQKASEAEHR
RPKDRPETRAPEQPRPMQEPGCVTHPKANNAGASIYPTGPADPCPPASESSPEQWQSPEDKPQDIHSQGE
ARQDLAVSGSSRGKARARATLDDLLDTLKLLEEEPEPLPHPKAYHKDRYAWTDEEEDANSLTADNLEKFG
KLSAAPGPPDDGTLLSEAKLQSIMTFLDEMEKSGQERPAPWRESLVLEAGSGSEGSTSVMRLKLELEEKK
QAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE
LKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQ
EVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRR
RLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEA
ERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYE
TELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEF
AEQLAASQEETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQ
HKGSSLSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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