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Report for CCDS36343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36343.1 Public Mus musculus 11 Ubtf 23 108 98 CCDS HistoryNCBI Gene:21429Re-query CCDS DB by CCDS ID:36343.1Re-query CCDS DB by GeneID:21429See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107115.7 ENSMUSP00000102732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107115.7Link to Ensembl Protein Viewer:ENSMUSP00000102732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107115Re-query CCDS DB by Protein ID:ENSMUSP00000102732
Original member Current member EBI ENSMUST00000107117.8 ENSMUSP00000102734.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107117.8Link to Ensembl Protein Viewer:ENSMUSP00000102734.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107117Re-query CCDS DB by Protein ID:ENSMUSP00000102734
Original member Current member EBI ENSMUST00000107119.8 ENSMUSP00000102736.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107119.8Link to Ensembl Protein Viewer:ENSMUSP00000102736.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107119Re-query CCDS DB by Protein ID:ENSMUSP00000102736
Original member Current member EBI ENSMUST00000178839.7 ENSMUSP00000136310.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178839.7Link to Ensembl Protein Viewer:ENSMUSP00000136310.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178839Re-query CCDS DB by Protein ID:ENSMUSP00000136310
Original member NCBI NM_001044383.3 NP_001037848.1 Updated not alive Link to Nucleotide Sequence:NM_001044383.3Link to Protein Sequence:NP_001037848.1Re-query CCDS DB by Nucleotide ID:NM_001044383Re-query CCDS DB by Protein ID:NP_001037848
Current member NCBI NM_001044383.4 NP_001037848.1 Accepted alive Link to Nucleotide Sequence:NM_001044383.4Link to Protein Sequence:NP_001037848.1Re-query CCDS DB by Nucleotide ID:NM_001044383Re-query CCDS DB by Protein ID:NP_001037848Link to BLAST:NP_001037848.1
Original member NCBI NM_001302954.2 NP_001289883.1 Updated not alive Link to Nucleotide Sequence:NM_001302954.2Link to Protein Sequence:NP_001289883.1Re-query CCDS DB by Nucleotide ID:NM_001302954Re-query CCDS DB by Protein ID:NP_001289883
Current member NCBI NM_001302954.3 NP_001289883.1 Accepted alive Link to Nucleotide Sequence:NM_001302954.3Link to Protein Sequence:NP_001289883.1Re-query CCDS DB by Nucleotide ID:NM_001302954Re-query CCDS DB by Protein ID:NP_001289883Link to BLAST:NP_001289883.1
Original member NCBI NM_001362547.1 NP_001349476.1 Updated not alive Link to Nucleotide Sequence:NM_001362547.1Link to Protein Sequence:NP_001349476.1Re-query CCDS DB by Nucleotide ID:NM_001362547Re-query CCDS DB by Protein ID:NP_001349476
Current member NCBI NM_001362547.2 NP_001349476.1 Accepted alive Link to Nucleotide Sequence:NM_001362547.2Link to Protein Sequence:NP_001349476.1Re-query CCDS DB by Nucleotide ID:NM_001362547Re-query CCDS DB by Protein ID:NP_001349476Link to BLAST:NP_001349476.1
Original member NCBI NM_001362548.1 NP_001349477.1 Updated not alive Link to Nucleotide Sequence:NM_001362548.1Link to Protein Sequence:NP_001349477.1Re-query CCDS DB by Nucleotide ID:NM_001362548Re-query CCDS DB by Protein ID:NP_001349477
Current member NCBI NM_001362548.2 NP_001349477.1 Accepted alive Link to Nucleotide Sequence:NM_001362548.2Link to Protein Sequence:NP_001349477.1Re-query CCDS DB by Nucleotide ID:NM_001362548Re-query CCDS DB by Protein ID:NP_001349477Link to BLAST:NP_001349477.1

Chromosomal Locations for CCDS 36343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102306641 102306766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102306856 102306999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307079 102307150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307244 102307291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307949 102308138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308229 102308317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308699 102308809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308894 102309049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309397 102309552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309654 102309767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309868 102309909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102310191 102310332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102310443 102310576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102311380 102311500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102311754 102311818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102313898 102314053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314139 102314222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314864 102315039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102316349 102316406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGAACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCC
AGGAAGATATGCTGACTCTGCTGGAATGCATGAAGAACAACCTCCCATCCAACGACAGCTCCAAGTTCAA
AACCACAGAGTCGCACATGGATTGGGAAAAAGTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAGCTC
AAATGGGTGGAGATTTCTAACGAGGTAAGGAAGTTCCGTACATTGACAGAATTGATCCTTGATGCTCAGG
AACATGTTAAAAACCCTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATTTTCCAAAGAAACCTCTCAC
CCCTTACTTCCGCTTCTTCATGGAGAAGCGGGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAACCTG
GACCTGACTAAGATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAAGAAGAAGATGAAATATATTCAGG
ACTTCCAGAGGGAGAAACAGGAGTTCGAGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTGACCTTAT
CCAGAATGCCAAGAAGTCGGACATCCCCGAGAAACCCAAAACTCCCCAGCAACTGTGGTACACCCACGAG
AAGAAGGTGTATCTCAAAGTGCGGCCGGATGAGATTATGCGGGACTATATCCAGAAGCACCCTGAGCTGA
ACATCAGTGAGGAAGGCATCACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGA
TGGGCGACCTACCAAGCCGCCTCCGAACAGCTACTCCCTGTACTGTGCGGAGCTCATGGCCAACATGAAG
GATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTCTCAGAAGGAGAAGG
ATGCCTATCACAAGAAATGTGACCAGAAAAAGAAAGATTATGAGGTAGAGCTGCTGCGGTTCCTTGAGAG
CTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGGGGAGGAGAAGATGCTGAACATCAATAAGAAGCAAACC
ACCAGTCCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGAAGCCCAAGCGGCCTG
TGTCTGCTATGTTCATCTTCTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACGACCTGAGCTCTCCGA
AAGCGAACTGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGTCCGAGAAGAAGAAGGCTAAATACAAG
GCCCGGGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGC
TGCCGGAGTCGCCCAAGAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGACTATCTGGCCCGCTT
CAAGAATGACCGGGTGAAAGCCTTGAAAGCCATGGAGATGACTTGGAACAACATGGAGAAGAAGGAGAAG
CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGAGAGTTAAGTGAGATGCGGGCCC
CTCCAGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAACGG
TTACCAGAAGTTCTCCCAGGAGCTGCTGTCCAATGGGGAGCTAAATCACCTGCCGCTGAAGGAGCGCATG
GTGGAGATTGGCAGCCGCTGGCAGCGCATCTCCCAGAGCCAGAAGGAGCACTATAAGAAGCTGGCGGAGG
AGCAACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGC
ATACAAAGAATACATCTCCAATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC
CGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGAGGATGACGATGAGGAGGAGGAGGACGACGAGGAGG
AGGAGGAAGAGGAAGATGATGAGAACGGTGACTCTTCTGAGGATGGCGGGGACTCTTCTGAGTCCAGCAG
TGAAGATGAAAGCGAGGATGGGGATGAGAATGATGATGACGACGACGATGAAGATGACGAAGATGACGAC
GATGAGGATGAAGACAACGAGTCTGAGGGCAGTAGCTCCAGCTCTTCATCCTCAGGGGACTCTTCGGATT
CTGACTCCAACTGA

Translation (727 aa):
MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKL
KWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNL
DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHE
KKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK
DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT
TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK
AREAALKAQSERKPGGEREDRGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEK
LMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERM
VEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKNMTKLRGPNPKSS
RTTLQSKSESEEDDDEEEEDDEEEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENDDDDDDEDDEDDD
DEDEDNESEGSSSSSSSSGDSSDSDSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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