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Report for CCDS3633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3633.1 Public Homo sapiens 4 TIGD2 24 110 108 CCDS HistoryNCBI Gene:166815Re-query CCDS DB by CCDS ID:3633.1Re-query CCDS DB by GeneID:166815See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3633.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000603357.3 ENSP00000486687.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000603357.3Link to Ensembl Protein Viewer:ENSP00000486687.1Re-query CCDS DB by Nucleotide ID:ENST00000603357Re-query CCDS DB by Protein ID:ENSP00000486687
Original member Current member NCBI NM_001382380.1 NP_001369309.1 Accepted alive Link to Nucleotide Sequence:NM_001382380.1Link to Protein Sequence:NP_001369309.1Re-query CCDS DB by Nucleotide ID:NM_001382380Re-query CCDS DB by Protein ID:NP_001369309Link to BLAST:NP_001369309.1
Original member Current member NCBI NM_145715.3 NP_663761.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145715.3Link to Protein Sequence:NP_663761.1Re-query CCDS DB by Nucleotide ID:NM_145715Re-query CCDS DB by Protein ID:NP_663761Link to BLAST:NP_663761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369309.1 525 Q4W5G0 525 100% 0 0
NP_663761.1 525 Q4W5G0 525 100% 0 0

Chromosomal Locations for CCDS 3633.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89112975 89114552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGTTGGGGAAACGTAAGCGTGTGGTGTTGACAATTAAGGACAAGCTTGACATTATTAAGAAACTTGAGG
AAGGCATCTCTTTCAAAAAACTTTCCGTGGTGTACGGAATTGGTGAATCCACAGTTCGTGATATTAAAAA
GAACAAAGAAAGGATTATAAACTATGCAAACAGTTCAGATCCTACCAGTGGAGTATCCAAACGTAAATCT
ATGAAGTCATCAACATACGAGGAGCTTGATAGAGTTATGATAGAGTGGTTTAACCAACAGAAAACAGATG
GGATTCCAGTGTCCGGAACGATTTGTGCAAAACAAGCCAAGTTCTTTTTTGATGCTTTGGGAATGGAAGG
TGATTTTAATGCATCGTCAGGCTGGCTAACTCGATTTAAGCAGCGCCATGGTATTCCAAAGGCTGCTGGT
AAAGGAACAAAATTAAAAGGAGATGAAACTGCTGCCAGAGAATTTTGTGGTAGCTTTCAGGAATTTGTTG
AAAAAGAGAATCTACAACCAGAGCAAATTTATGGTGCTGATCAAACTGGATTGTTTTGGAAATGTCTACC
ATCAAGGACATTAACTCTTGAAACTGACCAAAGTACTTCTGGGTGTAGGTCAAGCAGAGAGAGAATCATC
ATTATGTGTTGCGCAAATGCCACAGGTTTACACAAACTTAATCTTTGTGTTGTGGGGAAGGCCAAAAAGC
CCCGAGCATTCAAAGGCACTGACCTTTCAAACCTTCCTGTGACATATTACAGTCAAAAAGGTGCATGGAT
AGAACAGTCTGTTTTCAGACAGTGGTTTGAAAAGTACTTTGTGCCACAGGTACAGAAGCATTTGAAATCC
AAGGGACTTTTAGAAAAAGCAGTGCTTCTTTTAGATTTCCCCCCAGCACGTCCAAATGAAGAAATGTTGA
GTTCAGATGATGGCAGAATAATTGTGAAGTATTTGCCACCAAATGTCACAAGTCTGATTCAACCAATGAG
CCAGGGAGTTCTAGCCACTGTAAAAAGATACTATCGAGCAGGACTTCTCCAGAAATACATGGATGAAGGA
AATGACCCAAAAATATTTTGGAAGAACTTGACAGTGTTGGATGCAATTTATGAAGTGTCAAGAGCTTGGA
ACATGGTAAAATCAAGTACCATAACCAAAGCATGGAAAAAACTTTTCCCTGGCAATGAAGAGAATTCAGG
TATGAACATTGATGAAGGAGCCATTTTAGCAGCTAATTTAGCAACAGTTTTACAGAACACAGAAGAATGT
GAACATGTTGACATTGAGAATATTGATCAGTGGTTCGACTCTCGGAGCAGTGACTCAAGCTGTCAGGTGC
TGACTGACAGTGAAAGTGCTGAGGACCAGACCAAGGCTGCTGAGCAAAAGCCTTCCAGTAAGAGTAGAAA
AACAGAACTGAATCCAGAGAAGCATATTAGCCATAAAGCGGCACTTGAATGGACTGAAAATTTACTGGAT
TATCTTGAACAACAAGATGACATGCTTCTGTCTGATAAATTGGTATTAAGGAGGCTTCGGACCATAATAA
GAAAAAAACAGAAGATCCAAAATAACAAAAATCATTAA

Translation (525 aa):
MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKS
MKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASSGWLTRFKQRHGIPKAAG
KGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERII
IMCCANATGLHKLNLCVVGKAKKPRAFKGTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKS
KGLLEKAVLLLDFPPARPNEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEG
NDPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC
EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKAALEWTENLLD
YLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKNH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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