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Report for CCDS36248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36248.1 Public Mus musculus 11 Ccl8 23 108 98 CCDS HistoryNCBI Gene:20307Re-query CCDS DB by CCDS ID:36248.1Re-query CCDS DB by GeneID:20307See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009329.2 ENSMUSP00000009329.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009329.2Link to Ensembl Protein Viewer:ENSMUSP00000009329.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000009329Re-query CCDS DB by Protein ID:ENSMUSP00000009329
Original member Current member NCBI NM_021443.3 NP_067418.1 Accepted alive Link to Nucleotide Sequence:NM_021443.3Link to Protein Sequence:NP_067418.1Re-query CCDS DB by Nucleotide ID:NM_021443Re-query CCDS DB by Protein ID:NP_067418Link to BLAST:NP_067418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067418.1 97 Q9Z121 97 100% 0 0

Chromosomal Locations for CCDS 36248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 82115237 82115312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82116039 82116150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82116529 82116634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGAAGATCTACGCAGTGCTTCTTTGCCTGCTGCTCATAGCTGTCCCTGTCAGCCCAGAGAAGCTGACTG
GGCCAGATAAGGCTCCAGTCACCTGCTGCTTTCATGTACTAAAGCTGAAGATCCCCCTTCGGGTGCTGAA
AAGCTACGAGAGAATCAACAATATCCAGTGCCCCATGGAAGCTGTGGTTTTCCAGACCAAGCAGGGTATG
TCTCTCTGTGTAGACCCCACACAGAAGTGGGTCAGTGAGTACATGGAGATCCTTGACCAGAAGTCTCAAA
TTCTGCAGCCTTGA

Translation (97 aa):
MKIYAVLLCLLLIAVPVSPEKLTGPDKAPVTCCFHVLKLKIPLRVLKSYERINNIQCPMEAVVFQTKQGM
SLCVDPTQKWVSEYMEILDQKSQILQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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