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Report for CCDS36231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36231.1 Public Mus musculus 11 Abr 23 108 98 CCDS HistoryNCBI Gene:109934Re-query CCDS DB by CCDS ID:36231.1Re-query CCDS DB by GeneID:109934See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094012.10 ENSMUSP00000091551.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094012.10Link to Ensembl Protein Viewer:ENSMUSP00000091551.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094012Re-query CCDS DB by Protein ID:ENSMUSP00000091551
Original member NCBI NM_198018.2 NP_932135.1 Updated not alive Link to Nucleotide Sequence:NM_198018.2Link to Protein Sequence:NP_932135.1Re-query CCDS DB by Nucleotide ID:NM_198018Re-query CCDS DB by Protein ID:NP_932135
Current member NCBI NM_198018.3 NP_932135.1 Accepted alive Link to Nucleotide Sequence:NM_198018.3Link to Protein Sequence:NP_932135.1Re-query CCDS DB by Nucleotide ID:NM_198018Re-query CCDS DB by Protein ID:NP_932135Link to BLAST:NP_932135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932135.1 871 Q5SSL4-2 871 100% 0 0

Chromosomal Locations for CCDS 36231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76419104 76419193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76419735 76419882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76422153 76422258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76423048 76423182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76424034 76424173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76424914 76425023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76425267 76425326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76451853 76451984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76452331 76452428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76454516 76454590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76455609 76455713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76456161 76456236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76456600 76456722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76459181 76459346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76461293 76461414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76463528 76463668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76464238 76464290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76468716 76468776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76472489 76472596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76478995 76479180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76486438 76486536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76508888 76509169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGGCAGCCGGGGGCCGCCGCCGGCGCCCACTGCGCTACCAGTCCCTGGCAGCCCTGGTGGAAGACTCTC
AGTGGCCTTTCTTGTTCCTTGTCTCAGACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGA
GGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCC
CAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTG
GGGTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGAT
CTACATTAACCAGCTGGAAGCTCTGTTACTGCCCATGAAACCCCTGAAGGCCACAGCCACCACCTCCCAG
CCTGTGCTCACCATCCAACAGATTGAGACCATCTTCTACAAGATCCAGGACATCTACGAGATCCACAAGG
AGTTCTACGACAACCTCTGCCCCAAGGTGCAGCAGTGGGACAGCCAGGTCACCATGGGCCATCTTTTCCA
GAAACTGGCCAGCCAGCTTGGCGTGTACAAAGCATTTGTGGATAACTATAAAGTCGCTCTGGAGACAGCC
GAGAAGTGCAGCCAGTCCAACAACCAGTTCCAGAAGATCTCTGAGGAACTCAAAGTGAAAGGGCCCAAGG
ACTCTAAGGACAGCCATACATCAGTCACCATGGAAGCTCTGCTGTACAAGCCAATTGACCGAGTCACCCG
GAGCACCCTGGTCCTTCACGATCTGTTGAAGCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAG
GATGCTCTCCGCATCTCCCAGAATTTCCTGTCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAG
TCACAACCCCCAAGGGAGAGACTCGGCAGCTGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTC
CCGGAAGCTGCGGCATGTCTTTCTCTTCACAGATGTTCTGCTGTGTGCCAAGCTAAAGAAGACCTCAGCA
GGAAAGCATCAGCAGTATGACTGTAAGTGGTACATCCCTCTGGCTGACTTAGTGTTCCCATCCCCTGAGG
AGTCAGAGGCCAGTCCCCAGGTGCACCCCTTCCCAGACCACGAGCTCGAGGACATGAAAACGAAGATCTC
TGCCCTCAAGAGTGAGATCCAGAAGGAGAAAGCCAACAAAGGACAGAGCCGAGCCATTGAGCGCCTCAAA
AAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCAACGATCCCTTTCCGGATACACAATC
GGAATGGAAAGAGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCA
GAAGCTACAGAAGAAGGATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCC
TGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATGATGATGAGTCTCCAGGAC
TGTACGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGCTTTAAACAGTCAGCCAATCTTTACTGTAC
TCTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAGACCAGGGTGTTTCGGGACACGACAGAG
CCCAAGTGGGATGAGGAGTTTGAGATTGAGCTGGAGGGTTCACAGTCCCTGAGGATCCTGTGTTATGAGA
AGTGCTACGACAAGACCAAGGTCAACAAAGACAACAATGAGATTGTGGACAAGATCATGGGCAAGGGGCA
GATCCAGCTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGACGTGATTGAAATGAATGGGATC
AAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACCCCATCCAAAAAGCAGA
CAGGCGTCTTTGGAGTGAAGATCAGCGTGGTGACCAAGCGGGAGCGCTCCAAGGTGCCCTACATCGTCCG
GCAATGCATAGAAGAGGTGGAGAAGAGGGGCATTGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCC
ACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCAATAACAAGGACATCCTACTGATGCTGAGCGACA
TGGACATCAACGCCATCGCTGGGACCCTCAAGCTATACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGA
TAGACTTTATCCAGCCTTCATGGAGGGCATTGCCCTGTCAGACCCTGCTGCCAAGGAGAACTGCATGATG
CACCTACTCCGCTCCCTGCCTGACCCCAACCTCATCACCTTCCTTTTCCTGCTGGAACACTTGAAAAGGG
TTGCTGAGAAGGAGCCCATCAACAAGATGTCACTTCACAACCTTGCCACGGTGTTTGGCCCCACGTTACT
GAGACCATCAGAAGTGGAGAGCAAAGCACATCTCACATCAGCTGCAGACATCTGGTCCCATGATGTCATG
GCCCAGGTCCAGGTCCTCCTCTACTACCTGCAGCATCCCCCCATTTCCTTCGCAGAACTGAAGCGGAACA
CACTGTACTTCTCCACAGACGTGTAG

Translation (871 aa):
MAAGGRRRRPLRYQSLAALVEDSQWPFLFLVSDFSYGAEDYDAEGHEEQKGPPEGSETMPYIDESPTMSP
QLSARSQGGGDSVSPTPPEGLAPGVEAGKGLEMRKLVLSGFLASEEIYINQLEALLLPMKPLKATATTSQ
PVLTIQQIETIFYKIQDIYEIHKEFYDNLCPKVQQWDSQVTMGHLFQKLASQLGVYKAFVDNYKVALETA
EKCSQSNNQFQKISEELKVKGPKDSKDSHTSVTMEALLYKPIDRVTRSTLVLHDLLKHTPVDHPDYPLLQ
DALRISQNFLSSINEDIDPRRTAVTTPKGETRQLVKDGFLVEMSESSRKLRHVFLFTDVLLCAKLKKTSA
GKHQQYDCKWYIPLADLVFPSPEESEASPQVHPFPDHELEDMKTKISALKSEIQKEKANKGQSRAIERLK
KKMFENEFLLLLNSPTIPFRIHNRNGKSYLFLLSSDYERSEWREAIQKLQKKDLQAFVLSSVELQVLTGS
CFKLRTVHNIPVTSNKDDDESPGLYGFLHVIVHSAKGFKQSANLYCTLEVDSFGYFVSKAKTRVFRDTTE
PKWDEEFEIELEGSQSLRILCYEKCYDKTKVNKDNNEIVDKIMGKGQIQLDPQTVESKNWHTDVIEMNGI
KVEFSMKFTSRDMSLKRTPSKKQTGVFGVKISVVTKRERSKVPYIVRQCIEEVEKRGIEEVGIYRISGVA
TDIQALKAVFDANNKDILLMLSDMDINAIAGTLKLYFRELPEPLLTDRLYPAFMEGIALSDPAAKENCMM
HLLRSLPDPNLITFLFLLEHLKRVAEKEPINKMSLHNLATVFGPTLLRPSEVESKAHLTSAADIWSHDVM
AQVQVLLYYLQHPPISFAELKRNTLYFSTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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