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Report for CCDS36145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36145.1 Public Mus musculus 11 Scgb3a1 23 108 98 CCDS HistoryNCBI Gene:68662Re-query CCDS DB by CCDS ID:36145.1Re-query CCDS DB by GeneID:68662See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076006.4 ENSMUSP00000075387.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076006.4Link to Ensembl Protein Viewer:ENSMUSP00000075387.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076006Re-query CCDS DB by Protein ID:ENSMUSP00000075387
Original member Current member NCBI NM_170727.2 NP_733923.1 Accepted alive Link to Nucleotide Sequence:NM_170727.2Link to Protein Sequence:NP_733923.1Re-query CCDS DB by Nucleotide ID:NM_170727Re-query CCDS DB by Protein ID:NP_733923Link to BLAST:NP_733923.1

Chromosomal Locations for CCDS 36145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49664099 49664123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49664370 49664605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49664968 49664991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGTCCCCACAATCAGCAAGGCACAGTGTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCGGTAGAAC
CCGTGGCCGCCCTTGCTCCAGCTGCAGAGGCTGTGGCAGGGGCTGTGCCTAGCCTACCATTAAGCCACTT
GGCCATCCTGAGGTTCATCCTGGCCAGCATGGGCATCCCATTGGATCCTCTCATAGAGGGATCCAGGAAG
TGTGTCACCGAGCTGGGCCCTGAGGCTGTAGGAGCTGTGAAGTCACTGCTGGGGGTCCTGACAATGTTCG
GTTGA

Translation (94 aa):
MSPQSARHSVAFFMDSLAKPAVEPVAALAPAAEAVAGAVPSLPLSHLAILRFILASMGIPLDPLIEGSRK
CVTELGPEAVGAVKSLLGVLTMFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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