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Report for CCDS36127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36127.1 Public Mus musculus 11 Insyn2b 23 108 98 CCDS HistoryNCBI Gene:574403Re-query CCDS DB by CCDS ID:36127.1Re-query CCDS DB by GeneID:574403See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093192.3 ENSMUSP00000090883.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093192.3Link to Ensembl Protein Viewer:ENSMUSP00000090883.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093192Re-query CCDS DB by Protein ID:ENSMUSP00000090883
Original member Current member EBI ENSMUST00000165963.8 ENSMUSP00000129183.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165963.8Link to Ensembl Protein Viewer:ENSMUSP00000129183.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165963Re-query CCDS DB by Protein ID:ENSMUSP00000129183
Original member NCBI NM_001025382.2 NP_001020553.1 Updated not alive Link to Nucleotide Sequence:NM_001025382.2Link to Protein Sequence:NP_001020553.1Re-query CCDS DB by Nucleotide ID:NM_001025382Re-query CCDS DB by Protein ID:NP_001020553
Current member NCBI NM_001025382.3 NP_001020553.1 Accepted alive Link to Nucleotide Sequence:NM_001025382.3Link to Protein Sequence:NP_001020553.1Re-query CCDS DB by Nucleotide ID:NM_001025382Re-query CCDS DB by Protein ID:NP_001020553Link to BLAST:NP_001020553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020553.1 535 Q6GQV1 535 100% 0 0

Chromosomal Locations for CCDS 36127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34401960 34403305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34404278 34404352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34419719 34419905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCCCAGCAAAGTATGAAAGTGAGGCCTGTGCTCCTAAAGCGAAGCAGCCTTGAGTCTGTGGAGCTTG
TGAAACAACCGCACCACCGCAGGAGCAAATCGCAGCAAGTGCGATTCAAGGAAGATGGCAACATTAAGAA
TCCAACTGGCGTGACCGAGGTCAACACCCAAACCCCCGAAGACCCAGGTGTAATGGGGAAGGCACAGGCC
TCCAGGCACCATCATCCTACCACCTACTCGCTGTCTTTCCCCAGGTCCCACAAGGCAGGAGGATTCCGCA
GCATCTCCATCCAGACCTCCCCCAGTCTCAGGAAGCATTTCCCCGTTTTCAAAAGGAAGAAACTCACGAC
TAGCAAGTCCCTGGTGGAAATGCCAACAGCATCCCCAAGTGCCATCCAGGTCAACGGCAACCTATCTGAA
CAGGATATTGTGTCCTCTGACCTTGCCTTCCTGAGGCTGGCTCAGCATCTTGAGGATGGGCCTCGCAGGC
TCAAAATCCCCCACCCATTTCTCCCTAGGATGCCCAAGGTGCAAAGCAATGGGCCTGTCAGCTTCTGCTT
AGAATCTGGGACTTGGATGTCCTCAGAGAAAGCCACAGCTGCTATTCAGGTTCCAGATGATATTTGTCAC
AGTCCAACCTGGGAAGCTAGAGAGTCGGCTCTCAGCCCAGAAAGCTCAGCTGAAGAGAGCAACTCTATAC
CTGCTTTGATCTCCATGTGTCCAGGGGATGGGCAAAGAGTGATGACGTCAGAGCTGGAAAGAATGCCCCC
CTGCTCAAATACCAATAGCAGTGCCAGTAATATGCCGGGCACAGAAAAACTCACACCCGAATTGCTTTTG
CCCAAAGACAACCCTGATGACAAAGACCTTGGCCTTCCATCATCTCAGTCAAAGAAGATGTGTGTTCCCT
CACCACCACGGACTCACAGTTCGCCTGAGCCAGGCTCCCGTAGCCAGCCAGTCCACCTAGGAAGATCTTC
TGATTGCCCAGCCTCAGGTGACAATCACCAGGACCTGGAGTCACTCAGAAGTAGCAGTGCATCCAAGTCT
GTCCCTGTGTGCTGGGAACATGTGACAAAGCTCCCCAGCCAGTCAGACACCCCAGAGCTTCAGACTGGTG
TTGGAAGTGAGCAACTCCCTGCCTCGATTCCAAGGCAGGAGAACAGAGCTCAGAGCAGCAGGGAGATAGG
TGGGAGTAATCACAGTCACCTGGCGCAGGGAGAGCTCTGTGACCTCCAAGGCCGGCTGCAATCAGTAGAG
GAATCGCTGCACTCAAACCAAGAGAAAATTAAAGTCCTATTGAATGTGATTCAGGATCTGGAGAAAGCTC
ACGCTCTCACTGAAGGGCGGAACTTCTATCGGACTGGCCAAGATCTCAACAACTGCAGCACCTGCCAGAA
CACAGCATGCATCATATACAGTGTAGAGTATGATTTCCGGCAGCAGGAAGGCAGGTTCCATGAGGTTCTC
CAGAGTCTGGAGGAGGCAGAACCAACTGAGGAAGCACCTTCGCCACCCAAATCCCCAGCAGAAGCCCCGG
TCCCCGAGAAACAGGACTTACGGCGGAAGAGCAAGAAGGTGAAGAAGAAATGTTTCTGGTGGATATGA

Translation (535 aa):
MAQQSMKVRPVLLKRSSLESVELVKQPHHRRSKSQQVRFKEDGNIKNPTGVTEVNTQTPEDPGVMGKAQA
SRHHHPTTYSLSFPRSHKAGGFRSISIQTSPSLRKHFPVFKRKKLTTSKSLVEMPTASPSAIQVNGNLSE
QDIVSSDLAFLRLAQHLEDGPRRLKIPHPFLPRMPKVQSNGPVSFCLESGTWMSSEKATAAIQVPDDICH
SPTWEARESALSPESSAEESNSIPALISMCPGDGQRVMTSELERMPPCSNTNSSASNMPGTEKLTPELLL
PKDNPDDKDLGLPSSQSKKMCVPSPPRTHSSPEPGSRSQPVHLGRSSDCPASGDNHQDLESLRSSSASKS
VPVCWEHVTKLPSQSDTPELQTGVGSEQLPASIPRQENRAQSSREIGGSNHSHLAQGELCDLQGRLQSVE
ESLHSNQEKIKVLLNVIQDLEKAHALTEGRNFYRTGQDLNNCSTCQNTACIIYSVEYDFRQQEGRFHEVL
QSLEEAEPTEEAPSPPKSPAEAPVPEKQDLRRKSKKVKKKCFWWI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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