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Report for CCDS36125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36125.1 Public Mus musculus 11 Fbxw11 23 108 98 CCDS HistoryNCBI Gene:103583Re-query CCDS DB by CCDS ID:36125.1Re-query CCDS DB by GeneID:103583See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076383.7 ENSMUSP00000075721.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076383.7Link to Ensembl Protein Viewer:ENSMUSP00000075721.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000076383Re-query CCDS DB by Protein ID:ENSMUSP00000075721
Original member NCBI NM_134015.3 NP_598776.1 Updated not alive Link to Nucleotide Sequence:NM_134015.3Link to Protein Sequence:NP_598776.1Re-query CCDS DB by Nucleotide ID:NM_134015Re-query CCDS DB by Protein ID:NP_598776
Current member NCBI NM_134015.4 NP_598776.1 Accepted alive Link to Nucleotide Sequence:NM_134015.4Link to Protein Sequence:NP_598776.1Re-query CCDS DB by Nucleotide ID:NM_134015Re-query CCDS DB by Protein ID:NP_598776Link to BLAST:NP_598776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598776.1 563 Q5SRY7-2 563 100% 0 0

Chromosomal Locations for CCDS 36125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32642891 32642935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32680201 32680302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32708188 32708250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32711772 32711997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32720472 32720658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32722055 32722145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32731336 32731473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32733500 32733618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32735138 32735387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32738362 32738480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32739156 32739266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32740187 32740265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32742459 32742620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGAGCCCGACTCGGTGATTGAAGACAAGACCATCGAGCTCATGTGTTCTGTGCCAAGGTCTTTGTGGC
TAGGCTGCGCCAACCTGGTAGAGAGCATGTGCGCACTGAGTTGCCTGCAGAGCATGCCCAGTGTCAGATG
TCTCCAGAACACTTCAGTTATGGAAGATCAAAATGAAGATGAGTCCCCAAAGAAAAGTGCTCTTTGGCAG
ATCAGTAATGGAACGTCATCTGTGATTGTCTCCAGAAAGAGGCCGTCAGAGGGGAACTACCAGAAAGAAA
AGGACTTGTGCATTAAGTACTTTGACCAGTGGTCTGAATCAGATCAGGTGGAATTTGTGGAGCATCTTAT
CTCACGGATGTGTCATTATCAGCATGGACATATTAACTCTTACCTGAAGCCCATGTTGCAGCGGGACTTT
ATCACTGCTTTACCAGAGCAAGGCTTAGATCACATAGCAGAAAACATTCTCTCCTACCTGGATGCCAGGT
CTCTGTGTGCAGCAGAGCTGGTGTGTAAAGAATGGCAGCGAGTGATCTCAGAAGGGATGCTTTGGAAGAA
GCTGATTGAGAGGATGGTGCGCACCGACCCTCTCTGGAAGGGACTCTCAGAAAGAAGAGGCTGGGATCAG
TACCTGTTTAAAAACAGACCTACAGATGGCCCTCCCAACTCATTTTATAGATCATTATACCCAAAGATTA
TCCAGGACATAGAGACCATAGAATCCAACTGGCGGTGTGGACGACACAACTTGCAGAGGATCCAGTGCCG
CTCTGAAAATAGTAAGGGTGTCTACTGTTTGCAATATGATGATGACAAAATTATCAGTGGCCTCCGGGAC
AACTCTATCAAGATCTGGGATAAAAGCAGCTTGGAATGTTTGAAAGTGCTAACGGGCCACACAGGCTCTG
TCCTCTGCCTCCAGTATGATGAGCGAGTCATTGTAACTGGTTCTTCAGACTCCACGGTGAGAGTCTGGGA
TGTGAACACTGGTGAGGTGCTCAACACACTCATCCACCACAATGAAGCCGTACTGCACTTACGCTTCAGC
AATGGACTGATGGTGACTTGTTCCAAGGACCGTTCCATTGCCGTGTGGGACATGGCTTCTGCCACCGATA
TCACTTTACGCCGTGTTCTGGTTGGCCACCGTGCTGCTGTCAATGTAGTAGACTTTGATGATAAATACAT
CGTGTCTGCTTCAGGAGACAGGACCATTAAAGTGTGGAGCACGAGCACATGTGAGTTTGTCCGCACTCTG
AATGGGCACAAGCGAGGCATCGCCTGTCTGCAGTACCGCGACCGGCTTGTTGTTAGTGGATCATCAGATA
ATACCATCCGGTTATGGGATATTGAATGTGGTGCCTGTTTAAGAGTCCTAGAGGGGCACGAAGAATTGGT
CCGGTGCATCCGTTTTGATAACAAGAGGATTGTCAGTGGCGCCTATGATGGGAAGATTAAAGTCTGGGAC
TTGCAGGCTGCTCTTGACCCTCGGGCCCCAGCAAGCACATTGTGTCTGCGCACCTTGGTGGAACACTCTG
GACGTGTGTTTCGGCTGCAGTTTGATGAGTTTCAGATCATCAGCAGCTCCCATGATGACACTATTTTGAT
TTGGGATTTCTTAAATGTGCCTCCCAGTGCCCAGAATGAGACCCGCTCTCCCTCCAGAACCTACACCTAT
ATCTCCAGATAG

Translation (563 aa):
MEPDSVIEDKTIELMCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQNTSVMEDQNEDESPKKSALWQ
ISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDF
ITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQ
YLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRD
NSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS
NGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTL
NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD
LQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTY
ISR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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