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Report for CCDS36094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36094.1 Public Mus musculus 11 Sfi1 23 108 98 CCDS HistoryNCBI Gene:78887Re-query CCDS DB by CCDS ID:36094.1Re-query CCDS DB by GeneID:78887See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081318.12 ENSMUSP00000080066.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081318.12Link to Ensembl Protein Viewer:ENSMUSP00000080066.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081318Re-query CCDS DB by Protein ID:ENSMUSP00000080066
Original member Current member NCBI NM_030207.3 NP_084483.2 Accepted alive Link to Nucleotide Sequence:NM_030207.3Link to Protein Sequence:NP_084483.2Re-query CCDS DB by Nucleotide ID:NM_030207Re-query CCDS DB by Protein ID:NP_084483Link to BLAST:NP_084483.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084483.2 1216 Q3UZY0-1 1216 100% 0 0

Chromosomal Locations for CCDS 36094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3132027 3132131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3132216 3132327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3132887 3132965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3133072 3133207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3134318 3134501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3134626 3134730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3135283 3135542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3135654 3135830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3135943 3136017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3136625 3136699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3136946 3137106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3140137 3140233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3142308 3142410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3143260 3143336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3143695 3143790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3144217 3144292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3144792 3144970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3145241 3145322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3146162 3146292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3153432 3153498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3155399 3155496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3156772 3156864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3157866 3157936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3159985 3160146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3164557 3164713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3165576 3165678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3170587 3170704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3177427 3177521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3179397 3179507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3186065 3186136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3187240 3187410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3188941 3188963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGAGAAGAAGATTGGTTCCAGGTCTTTTAGGGATGGTGTGGTTAAGAAACCTTGTTCTCCAAAGACCC
TGCCCCTCAAAAAGTCTTCTGCCTTCTCTGGGATCCAGAGGGAGCCATCTAGAAGCTGCCACTCTATATA
CTATCATGCCTCACAAAACTGGACTCGGTACCGATTACAAGAACTTCGAATCAGGTGTGTGGCCAGAAAG
TTCCTGTATTTGTGGATTCGAGTGACTTTTGGAAGAGTGACTCCCTCTAGAGCCAGGATTTTCCATGAGC
AGAAAATATTACAGAAGGTCTTCGGAGAATGGAGGGAAGAATGGTGGGTCTCCCAGAGGGAGTGGAAGCT
CTGTGTCCGAGCTGACTGTCACTACAGATACTACTTGTACAACCTGATTTTCCAGAACTGGAAGACCTTT
GTGCACCAGCAACGGGAGATGAGGAAGAGGTTCCGAATAGCTGAGCATCATGATACGAAGCAGAAGATGT
GCCAAGCCTGGAAGTCCTGGTTGATATACATGGTTTCTCGTAGGACCAAACTTCACATGAAGACTACTGC
TCTAGAGTTTAGGAGGCAGAGTGTCTTATGTTTCTGGTGGAGCAAGTGGAGGTGGCGACTAGGACAAGCC
CATGCAGAGCACGCTCTCCATGCAGTGGCTGTGAAGCACAGGGCCCTGAGCCTCCAGCTGCAGGGTTGGC
TGCGATGGCAAGAACAGCTTCTAATTAGCCAGCGAGATAGGAGGAAGGAGGCCACTGCTGTGCAACACTA
TCAGCACTGGCAGAAGCAGAGATCTCTGAAGGCTTGGCTTAAATACCTCCAAATCTGCAGGGTGAAGAGA
TGGCAGAATGAGATGGCTGTACAATTCCACCGTGCTACTGTGCTCCAGATACATTTCTGTGACTGGCAGT
GGGCCTGGGAGTGGAGGCAGAGCTTGTCTGCCCACCAGGCCCTGGTGGTGAAGCTGGCCGGGAGGATGGT
CCTGCGGAGGGCCTTTACACACTGGAAGCACTACATGTTGCTACAGGCAGAAGAGGCTGCCCAGCGCGAG
GCAGCAGCTGAACACCGCCAGCACTACCTGCTGTATTCTTGCTTTAGAGCCTTCAAAGACAACGTGACCC
AGGCCCGACTACAGCAAACAAGAAAGAAGCTTGCTCAGCAGCTGCGTGACACTACATTGCTTCACAGGTT
CTGGAACCTCTGGCAGTCTCGAATTGAGCAGAGGGAGGAGAGGGTACAGACCCCCTCATTGCATGCAGCC
CTGAGCCACTACAGGGTGACAGTCCTACACAAGTGTGTCAGGGTGTGGCTACGGTATGTGCACAAGAGAC
AATGGCAGCAGTTATTGCGGGCCAGAGCAGATGGTCATTTCCAGCAGCGAGCACTGCCTGCTGCCTTCTA
CACGTGGTACAGAGGCTGGCTATGGCACCAGCAGAGACGGATCCTGCACACAAAAGCAGTGCGTTTCCAC
AGAGGGACATTAGAGAAGCAAGTATTTGCTCTCTGGAGGCAGAAGATGTCTCAGCATCGAGAAAACTGCT
TGGCAGAGAGAATGGCTATACTGCAGGCAGAGCAGCAGCTTTTGCGTAGGTTCTGGTTCGTGTGGCACCA
GCAGGCAGCAGTGTGTCAGCTGGAGCGACAGCAGCAAGCCATGGCCATTGCCCACCACCACAGTGGACTG
CTCAGGAGGGCTTTCTGCATCTGGAAGGAAAGCACCCAAGGATTTAGGATAGAGAGGATGGGCAGGGCAC
AGGCTGCGCACTTCCACTCTGCACAGCTCTTGAGTCGGGCCTGGAGCATGTGGAGGGAGTGCCTGGCCCT
GAGGCTGGAAGAGCAGCAGAAACTGAAGTGTGCGGCCCTGCACAGCCAGTGCATCCTGCTTCGCAGGGCT
CTGCAGAAGTGGCTGGTTTACCAGAATAGGGTGAGGAGTGTTCTGCGGGAGGTGGCGGCCAGGGAGAGAC
AGCACAACAGGCAGCTGCTGTGGTGGGCGTTACATCTCTGGAGAGAAAACACCATGGCCCGTTTGGATGG
AGCCAAAAAAACCTCTCAAGCAAGAGTTCACTACAGCAGGACTCTGTGCTCCAAGGTCCTCGTCCAGTGG
CGAGAGGTTACTTCAGTGCAGATATATTACCGACAAAAGGAGGCAGCTGCCCTCAGGGAGGCCCGGAAAG
CACTGGACAGGGGTCGTCTCCAGAACTGGTTTCAGCACTGGCGATTCTGCAGCCAGAGGGCAGCCCAGCA
GAGATTCCAGCTGGGACAGGCGGCTCAGCATCACCACTGGCAGCTGCTGATGGAAGCAATGGCCAGGTGG
AAGGCACACCATCTGGGGTGTATCAGAAAGAAGTTTCTGCAGAGGCAAGCTGCCCAACTCCTGGCACAGA
GACTCAGTCGGGCCTGCTTCTGCCAGTGGAGGAAGCAGCTGGCAGTCCGGAAGCAAGAACAGTGGGGCAC
AGCCCGGGCCCTGTGGCTCTGGGCCTTCTCACTACAAGCAAAGGTGTGGACTGCATGGCTGGGCTTCGTA
CTTGAGAGGAGGAGGAAGAAGGCACGGCTGGAACGGGCTATGCAAGCCTACCAGCAGCAGCTCCTACAGG
AGGGTGCCACACGGCTTCTGCGCTTCACAGCTGGTACGAAGGCCTTCCGGCAGCAGCTCCAGGCCCAGCA
GCAGGTCCAGGCAGCCCACAGCCTCCACTGTGCAGTCCGCCACTGTGCTGAGCTCTGGAAAAAGAAGGTG
CTTGGTCCAGGCAAGACTTCTCAACCACCAGCACCCACCACATTCAGCAAGAGAGTGACATTTAAGGATT
CTTTCCTCTCTGGACATGCTGCGGAGGCTGGAGATGCTACCCAGGAGACAAAGAAGCTTCGAGCTCCTCC
ATCTCAGGGAGTCCTGGGTAGTTTGGCAGGAGCTGCTGGGGAGCCCTGCCACCTAGACCTCAATGCAGCC
CGCTCATCACGGAAACAGCCCCGACGTCCATCCTTCCTGCTTGAGCGTTTGGGGAGTCAGAGGTCCCCAG
AGTGGTACAGCCTTGGGGAGCAGCAGTTAGAGAAGCCCCCAGAGGAGGAAAGCACGGCTCTGCTGGGAGG
CTCTTCCCTGACAAGACCCTTCCTACCTGGGGTCCTGCCGAATGTTCCTGGTCCGAAGCTGCCTCCTACG
GCCAGTCCAGGCCTGGAGCTGCTGCCTCCCTCCTCCATCATGCCCCATGCGGCAGGAGGCACTGCTAGGG
TGTCAGCGAAGCCCAGCATCCCTGGGCCTCAGCCTTGGGGGTGCCCGTCCTTACCCAGGGACCTTGATCC
CCAACTCCTCCCTGGAGATTCCATAAGCACCCGGACTGAGCCTGTTTATGGCTCAGAGGCTACAGGCCAC
ACAGAGCTTGAGGCTGAGTTGGAGGGGATCCAGCAGCAGTTACAACACTACCAAACCACCAAGCAGAACC
TTTGGTCATGCCAGCGACAAGCCAACAGCCTGCGTAGGTGGCTGGAGCTAAGCCAGGAGGAGCCGAAATC
CGAGGACCTTCACCTAGAAGAGCAGGTGAAAACAGAACTGGAGGAGGTGGAACTACAGGTCCAGCAGCTG
GCTAAGGAGCTTGAGGCCCAGCGTCAGCCTGTTGGTACATGCATTGCTCGTGTTCGGGCCCTGAGACGGG
CACTGTGCTAG

Translation (1216 aa):
MEKKIGSRSFRDGVVKKPCSPKTLPLKKSSAFSGIQREPSRSCHSIYYHASQNWTRYRLQELRIRCVARK
FLYLWIRVTFGRVTPSRARIFHEQKILQKVFGEWREEWWVSQREWKLCVRADCHYRYYLYNLIFQNWKTF
VHQQREMRKRFRIAEHHDTKQKMCQAWKSWLIYMVSRRTKLHMKTTALEFRRQSVLCFWWSKWRWRLGQA
HAEHALHAVAVKHRALSLQLQGWLRWQEQLLISQRDRRKEATAVQHYQHWQKQRSLKAWLKYLQICRVKR
WQNEMAVQFHRATVLQIHFCDWQWAWEWRQSLSAHQALVVKLAGRMVLRRAFTHWKHYMLLQAEEAAQRE
AAAEHRQHYLLYSCFRAFKDNVTQARLQQTRKKLAQQLRDTTLLHRFWNLWQSRIEQREERVQTPSLHAA
LSHYRVTVLHKCVRVWLRYVHKRQWQQLLRARADGHFQQRALPAAFYTWYRGWLWHQQRRILHTKAVRFH
RGTLEKQVFALWRQKMSQHRENCLAERMAILQAEQQLLRRFWFVWHQQAAVCQLERQQQAMAIAHHHSGL
LRRAFCIWKESTQGFRIERMGRAQAAHFHSAQLLSRAWSMWRECLALRLEEQQKLKCAALHSQCILLRRA
LQKWLVYQNRVRSVLREVAARERQHNRQLLWWALHLWRENTMARLDGAKKTSQARVHYSRTLCSKVLVQW
REVTSVQIYYRQKEAAALREARKALDRGRLQNWFQHWRFCSQRAAQQRFQLGQAAQHHHWQLLMEAMARW
KAHHLGCIRKKFLQRQAAQLLAQRLSRACFCQWRKQLAVRKQEQWGTARALWLWAFSLQAKVWTAWLGFV
LERRRKKARLERAMQAYQQQLLQEGATRLLRFTAGTKAFRQQLQAQQQVQAAHSLHCAVRHCAELWKKKV
LGPGKTSQPPAPTTFSKRVTFKDSFLSGHAAEAGDATQETKKLRAPPSQGVLGSLAGAAGEPCHLDLNAA
RSSRKQPRRPSFLLERLGSQRSPEWYSLGEQQLEKPPEEESTALLGGSSLTRPFLPGVLPNVPGPKLPPT
ASPGLELLPPSSIMPHAAGGTARVSAKPSIPGPQPWGCPSLPRDLDPQLLPGDSISTRTEPVYGSEATGH
TELEAELEGIQQQLQHYQTTKQNLWSCQRQANSLRRWLELSQEEPKSEDLHLEEQVKTELEEVELQVQQL
AKELEAQRQPVGTCIARVRALRRALC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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