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Report for CCDS36069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36069.1 Public Mus musculus 10 Mdm1 23 108 98 CCDS HistoryNCBI Gene:17245Re-query CCDS DB by CCDS ID:36069.1Re-query CCDS DB by GeneID:17245See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020437.12 ENSMUSP00000020437.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020437.12Link to Ensembl Protein Viewer:ENSMUSP00000020437.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020437Re-query CCDS DB by Protein ID:ENSMUSP00000020437
Original member NCBI NM_148922.3 NP_683724.2 Updated not alive Link to Nucleotide Sequence:NM_148922.3Link to Protein Sequence:NP_683724.2Re-query CCDS DB by Nucleotide ID:NM_148922Re-query CCDS DB by Protein ID:NP_683724
Current member NCBI NM_148922.4 NP_683724.2 Accepted alive Link to Nucleotide Sequence:NM_148922.4Link to Protein Sequence:NP_683724.2Re-query CCDS DB by Nucleotide ID:NM_148922Re-query CCDS DB by Protein ID:NP_683724Link to BLAST:NP_683724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683724.2 708 Q9D067-1 708 100% 0 0

Chromosomal Locations for CCDS 36069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 118141945 118141962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118142850 118142964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118146595 118146971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118147981 118148115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118150789 118150956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118152002 118152096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118152175 118152274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118157195 118157370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118158302 118158604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118159447 118159556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118159660 118159769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118164201 118164447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118166625 118166684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118168051 118168163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGCCGGTGCGCTTCAAGGGGCTGAGTGAATACCAGAGAAACTTCCTGTGGAAAAAGTCCTATTTGTCAG
AGTCTTATAATCCCTCAGTGGGACAAAAGTACTCATGGGCAGGACTTAGATCGGATCAGTTGGGGATCAC
GAAAGAACCAGGTTTTATTTCAAAAAGAAGAGTTCCCTACCATGACCCTCAGATTTCAAAATACCTGGAG
TGGAACGGAACCGTCAGAAAGAAGGATACGCTTGTCCCACCAGAACCCCAGGCCTTTGGAACGCCAAAGC
CACAAGAGGCTGAGCAAGGAGAAGATGCCAATCAAGAAGCAGTTCTCTCACTAGAGGCCTCCAGGGTTCC
CAAGAGAACTCGGTCTCATTCTGCGGACTCGAGAGCTGAAGGGGTTTCAGACACTGTGGAAAAGCACCAG
GGTGTCACGAGAAGCCATGCGCCAGTTAGCGCGGATGTGGAGCTGAGACCTTCCAGCAAACAACCTCTCT
CCCAGAGCATAGATCCCAGGTTGGATAGGCATCTTCGTAAGAAAGCTGGATTGGCCGTTGTTCCCACGAA
TAATGCCTTGAGAAATTCTGAATACCAAAGGCAGTTTGTTTGGAAGACTTCTAAAGAAAGCGCTCCAGTG
TTTGCATCCAATCAGGTTTTCCGTAATAAAAGCCAAATTATTCCACAGTTCCAAGGCAATACATTCACCC
ACGAGACTGAATACAAGCGAAATTTCAAGGGTTTAACTCCAGTGAAGGAACCAAAGTCAAGAGAGTATTT
GAAAGGAAACAGCAGTCTGGAGATGCTGACTCCAGTAAAGAAGGCAGATGAGCCTTTAGACTTAGAAGTA
GACATGGCGTCGGAAGACTCAGACCAGTCTGTAAAGAAGCCTGCTTCATGGAGACACCAAAGGCTTGGAA
AAGTGAATTCTGAATATAGAGCAAAGTTCCTGAGCCCAGCCCAGTATTTCTATAAAGCTGGAGCTTGGAC
CCGGGTGAAGGAGAACCTGTCAAACCAGGTTAAGGAGCTCCGAGAAAAGGCCGAATCTTACAGGAAGCGA
GTTCAGGGGACACATTTTTCTCGGGACCATCTGAACCAGATTATGTCGGACAGCAACTGCTGTTGGGACG
TCTCCTCAGTCACAAGCTCGGAAGGCACCGTCAGTAGCAACATCCGAGCACTGGATCTTGCTGGAGACCT
TACAAACCACAGGACCCCCCAGAAACACCCTCCTACCAAACTAGAAGAAAGAAAAGTTGCCTCGGGAGAG
CAGCCCCTGAAAAACTCCACCAGGAGACTGGAGATGCCAGAGCCTGCCGCCTCGGTCAGGAGGAAGCTGG
CTTGGGATGCTGAGGAGAGCACGAAGGAAGACACCCAGGAGGAGCCCAGGGCGGAGGAGGACGGGAGAGA
GGAGAGAGGACAGGACAAGCAGACCTGTGCGGTAGAGCTGGAGAAACCGGACACACAGACACCCAAGGCA
GACAGACTGACAGAAGGGTCGGAGACATCTTCTGTTTCCTCAGGGAAGGGAGGCAGGCTTCCTACACCGA
GGCTGAGAGAACTCGGTATCCAGCGGACGCACCATGATCTCACGACGCCAGCTGTTGGTGGCGCAGTCTT
AGTGTCTCCATCTAAAGTGAAGCCACCAGGCCTCGAGCAGAGGAGGAGAGCGTCCTCCCAAGATGGCTTA
GAAACTCTGAAGAAAGACATTACTAAGAAAGGAAAACCCCGTCCCATGTCTCTGTTGACTTCTCCGGCTG
CTGGCATGAAGACAGTTGATCCCCTGCCTCTGCGAGAAGACTGTGAAGCCAATGTGCTCAGATTTGCTGA
TACTCTTCCTGTTTCGAAAATTTTGGACCGTCAGCCCAGCACCCCTGGGCAGCTGCCTCCATGTGCCCCG
CCTTACTGTCATCCGTCCAGCAGGATCCAGGGCCGTCTGCGAGACCCTGAGTTTCAGCACAACATGGGAA
AACCCAGGACGAACAATTTGCAGCTACATCCACACGATGCCTTTAATGATGAAGATGCAGATAGACTGTC
TGAGATCTCTGCTCGCTCTGCAGTTTCCAGCCTCCGGGCTTTCCAGACTCTAGCCCGAGCTCAGAAAAGA
AAGGAGAATTTCTGGGGCAAGCCATAA

Translation (708 aa):
MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGQKYSWAGLRSDQLGITKEPGFISKRRVPYHDPQISKYLE
WNGTVRKKDTLVPPEPQAFGTPKPQEAEQGEDANQEAVLSLEASRVPKRTRSHSADSRAEGVSDTVEKHQ
GVTRSHAPVSADVELRPSSKQPLSQSIDPRLDRHLRKKAGLAVVPTNNALRNSEYQRQFVWKTSKESAPV
FASNQVFRNKSQIIPQFQGNTFTHETEYKRNFKGLTPVKEPKSREYLKGNSSLEMLTPVKKADEPLDLEV
DMASEDSDQSVKKPASWRHQRLGKVNSEYRAKFLSPAQYFYKAGAWTRVKENLSNQVKELREKAESYRKR
VQGTHFSRDHLNQIMSDSNCCWDVSSVTSSEGTVSSNIRALDLAGDLTNHRTPQKHPPTKLEERKVASGE
QPLKNSTRRLEMPEPAASVRRKLAWDAEESTKEDTQEEPRAEEDGREERGQDKQTCAVELEKPDTQTPKA
DRLTEGSETSSVSSGKGGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPSKVKPPGLEQRRRASSQDGL
ETLKKDITKKGKPRPMSLLTSPAAGMKTVDPLPLREDCEANVLRFADTLPVSKILDRQPSTPGQLPPCAP
PYCHPSSRIQGRLRDPEFQHNMGKPRTNNLQLHPHDAFNDEDADRLSEISARSAVSSLRAFQTLARAQKR
KENFWGKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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