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Report for CCDS35965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35965.1 Public Mus musculus 10 2610008E11Rik 23 108 98 CCDS HistoryNCBI Gene:72128Re-query CCDS DB by CCDS ID:35965.1Re-query CCDS DB by GeneID:72128See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039271.6 ENSMUSP00000044020.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039271.6Link to Ensembl Protein Viewer:ENSMUSP00000044020.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039271Re-query CCDS DB by Protein ID:ENSMUSP00000044020
Original member Current member NCBI NM_001004362.2 NP_001004362.2 Accepted alive Link to Nucleotide Sequence:NM_001004362.2Link to Protein Sequence:NP_001004362.2Re-query CCDS DB by Nucleotide ID:NM_001004362Re-query CCDS DB by Protein ID:NP_001004362Link to BLAST:NP_001004362.2

Chromosomal Locations for CCDS 35965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79066471 79068051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79068634 79068728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79088287 79088379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79092412 79092504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79094431 79094557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79097458 79097478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGTCGGCAGAGCCTGTCATGGAGTCGGTGTCATTCGAGGACATTGCTGTGTTCTTCACCTGGGAGGAGT
GGCAGGACCTAGACATTGCTCAGAAGTTGCTCTACAGGGATGTGATGCTGGAGAACTACAGTAGCCTGGT
GTCCTTGGGCTGCTGTGTGATCAAACCTGAGTTGATCCTCATGTTGGAACGTGAATTTGGGCCATGGAGG
GTAGCAGATACCTCAGTCTGGAACCTTCCAGGGTACTGCATGACCAGACCAGAATTGAACTTCAAGTTAT
CGCATGGATTTGAGCCGTGGAATGGCTCAGAAGCCTCGCTTTGGAGCCTCCCAGATGTCCATAAGGTAAG
TGTCCTGGGAAATCAAGAGACACACTTGTGGCAAGCTGAAGTCACTGGTGGCATTACATCCTATGAACAG
ATGGTTGAAGCAGAACTACAGATTCAAGAAAAAATTCATCGAGAGGCAAAAATACATGAATATAAAGATT
GTATGGAAACATTTTATCCGAATTCACAGCACACCAGGAATCAGACATCTCAGTCATATGAGAACCCCTT
TGGATGGGAGGAATTTAGAAAAGCTTTCTATTATCAATCAACCCTCACTCAACATCAAAGATTTCATATA
GGCGAAAAACTCTATGACTCTCCACAGTGCTGGGAAATTTTCCCCTGGAAGTCCCAACTCAGTGTACATG
AGACATTTCATGCAGGTGAGAGACGCTATGAGTGTGAAGAATGCAGGAAGTCTTTTCATCGGAAGGCAAA
CCTTATTCGACATCAGAGAAGAACACATAGCAGAGAGAAGCCGTATGAATGTATAGAATGTGGGAAAACT
TTCTACTGTAAGTCAGATGTCACTCGACATCAGAGAAGAACTCACAGTAGAGAAAAACCCTACGAATGTG
TAGAATGCAGTAAGACTTTCTACTGTAAGTCATACCTCATTCGACATCAGAGTAGAACTCACAGTAGAGA
GAAGCCCTATGAGTGTACAGAATGTACTAAAACTTTTTACTGTAAATCAGATCTTACTCGTCATCAAACA
ACTCATAGTGGGGAAAAGCCTTTTGAATGTAATGAATGCTCTAAAACATTCTACTATAAATCAGACCTCG
CTAATCATCAGAAAACGCATACAGATGATAATCCCTATGAATGTAAAGAATGTAGAAAAACTTTCTGCTC
CAAGTCAAGCCTCAATCAGCATCATAGGATTCATACAGGTGAGAAGCCCTATGAATGTAATGAATGTAAG
AAAAGTTTCAATTCTAAGTCAAATCTCACTGAGCATCAGAGAAGAACTCATACCAGAGAGAAACCCTATG
AATGTAACGAATGTTGGAAATCCTTCTACTGTAGGTCAGAACTTACGAATCATCAGAGGACTCATACAGT
TGAGAGGTACTATGAATGTAAAGAGTGTAGAAAAAATTTCTACTGTAAGTCAAACCTCAATCAACATCAA
AGAACTCACACCGGAGAGAAACCGTATGAATGTAAAGACTGCAACAAAGCTTTCTATTGTAAGTCAAACC
TCAATCAACATCAAAGAACTCATACAGGTGAAAAACCTTTTGCATGTAAAGACTGTAGTAAAGCTTTCTA
TTGTAAGTCAAGCCTTGTTAAACATCAAAAAATCCATTCAGGTGAGAAGCCATATGAATGTGAAGAATGT
AGAAAAACTTTTTTCCAAAAGTCAGACCTCACTCGACATCAGAGGACACATACAGGTGAAAAGCCCTATG
AGTGTAAAGACTGTAGCAAAACTTTCTATTGTAAGTCAAACCTCAATCAACATCAGAGAACTCACACGCA
TGAAAAACCTTATGAATGTAAAGAATGTAGGGAAACATTCTATTCTAAGTCAGAGCTTACAGAACATCAA
AGAACTCATACAGATGAAAAACCATATGTGATGTTTAATATTGATTGTCAACTCGACAAGATCTGGGATC
ATCTGGGAGACAGGCCTGTAGGCATGCCTGTGAAAGATTATCTAGATTAA

Translation (669 aa):
MSAEPVMESVSFEDIAVFFTWEEWQDLDIAQKLLYRDVMLENYSSLVSLGCCVIKPELILMLEREFGPWR
VADTSVWNLPGYCMTRPELNFKLSHGFEPWNGSEASLWSLPDVHKVSVLGNQETHLWQAEVTGGITSYEQ
MVEAELQIQEKIHREAKIHEYKDCMETFYPNSQHTRNQTSQSYENPFGWEEFRKAFYYQSTLTQHQRFHI
GEKLYDSPQCWEIFPWKSQLSVHETFHAGERRYECEECRKSFHRKANLIRHQRRTHSREKPYECIECGKT
FYCKSDVTRHQRRTHSREKPYECVECSKTFYCKSYLIRHQSRTHSREKPYECTECTKTFYCKSDLTRHQT
THSGEKPFECNECSKTFYYKSDLANHQKTHTDDNPYECKECRKTFCSKSSLNQHHRIHTGEKPYECNECK
KSFNSKSNLTEHQRRTHTREKPYECNECWKSFYCRSELTNHQRTHTVERYYECKECRKNFYCKSNLNQHQ
RTHTGEKPYECKDCNKAFYCKSNLNQHQRTHTGEKPFACKDCSKAFYCKSSLVKHQKIHSGEKPYECEEC
RKTFFQKSDLTRHQRTHTGEKPYECKDCSKTFYCKSNLNQHQRTHTHEKPYECKECRETFYSKSELTEHQ
RTHTDEKPYVMFNIDCQLDKIWDHLGDRPVGMPVKDYLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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