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Report for CCDS35878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35878.1 Public Mus musculus 10 Calhm4 23 108 98 CCDS HistoryNCBI Gene:270711Re-query CCDS DB by CCDS ID:35878.1Re-query CCDS DB by GeneID:270711See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048052.6 ENSMUSP00000042466.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048052.6Link to Ensembl Protein Viewer:ENSMUSP00000042466.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048052Re-query CCDS DB by Protein ID:ENSMUSP00000042466
Original member Current member NCBI NM_001081165.1 NP_001074634.1 Accepted alive Link to Nucleotide Sequence:NM_001081165.1Link to Protein Sequence:NP_001074634.1Re-query CCDS DB by Nucleotide ID:NM_001081165Re-query CCDS DB by Protein ID:NP_001074634Link to BLAST:NP_001074634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074634.1 315 Q8CE93 315 100% 0 0

Chromosomal Locations for CCDS 35878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34041506 34041892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34043709 34044269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGAGCCCAGATCTCAACTGTATTTCATCTTCTCTGCTCAGAAGTGAACCGTGCATCAATTCTTTGATAG
CGATTTTGACTGTTTGCGGACAGCAACTGTTCTCCTCTTATACATTCAGTTGTCCGTGTCAAGTCGGAAA
AAATTTCTATTATGGTTCAGCTTTTCTTGTGGTTCCTGCCTTGATCCTTCTGATTGCTGGCTATGCTCTA
CGAGGCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCA
GCCCTCTGGAGAGGAGATTGGCTTGCCTCATGTTCTTCGACATCACTGGGAGGGCTCTGGTTGCTCCACT
GACATGGTTGACGGTGACCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTG
GACCAATACCCGATGTTTGCTAATGTCACTCCTAGCAAACGAGAAGAGATGCTAGCTGGATTTCCATGCT
ACACGTCAGCTCCCTCTGATGTGATTCCAATAAGAGATGAAGTGGCTCTTCTACACAGATACCAGTCACA
AATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATGT
TGCTCTCCCCTCACCTCTCTGCAGCATCACTATTGGACCAATCACCTCCACAACGAGAGAGTGCTCTTTG
AGAAAGCTGCTGAGGAGCATTCCCAACTTCTTATTAGACATCGAATCAAGAAAGTATTTGGCTTCGTTCC
TGGGAGTGAAGACATCAAACATATTCGTATCCCTTCGTGTCAGGACTGGAGAGAAATCTCTGTACCCAAT
CTTCTATGTGTGGGTGACACCTCACAGGGTCCCTATAGCTTCCTTGGAGACAGGGTGGTTGAGGAAAATG
AGGAAGATAGACAAGAAGGTATTGAAATGAAACCTTGA

Translation (315 aa):
MSPDLNCISSSLLRSEPCINSLIAILTVCGQQLFSSYTFSCPCQVGKNFYYGSAFLVVPALILLIAGYAL
RGQMWTVASEYCCCSCTPPYRRSSPLERRLACLMFFDITGRALVAPLTWLTVTLLTGTYYECAASEFASV
DQYPMFANVTPSKREEMLAGFPCYTSAPSDVIPIRDEVALLHRYQSQMLGWILVVLATIALLLSKCLARC
CSPLTSLQHHYWTNHLHNERVLFEKAAEEHSQLLIRHRIKKVFGFVPGSEDIKHIRIPSCQDWREISVPN
LLCVGDTSQGPYSFLGDRVVEENEEDRQEGIEMKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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