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Report for CCDS3587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3587.1 Public Homo sapiens 4 CFAP299 24 110 108 CCDS HistoryNCBI Gene:255119Re-query CCDS DB by CCDS ID:3587.1Re-query CCDS DB by GeneID:255119See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358105.8 ENSP00000350818.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358105.8Link to Ensembl Protein Viewer:ENSP00000350818.3Re-query CCDS DB by Nucleotide ID:ENST00000358105Re-query CCDS DB by Protein ID:ENSP00000350818
Original member Current member NCBI NM_152770.3 NP_689983.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152770.3Link to Protein Sequence:NP_689983.2Re-query CCDS DB by Nucleotide ID:NM_152770Re-query CCDS DB by Protein ID:NP_689983Link to BLAST:NP_689983.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689983.2 233 Q6V702-2 233 100% 0 0

Chromosomal Locations for CCDS 3587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 80335769 80335879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80362754 80362884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80583093 80583183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80869993 80870135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80944810 80944939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80963517 80963612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGATCAGGAAGAGGGGCTGAAGGCCTTGGACAATATTGTCACTCAATTCAACGCCTATGAAGATTTCC
TGGACTCGCAGATCACTACTGTGGACTTGTACTACCTGGAGGATGAAACCCTGGCCCGCCAGTTGGTGGA
GCTAGGCTACCGAGGGACTGGAGAGAGAGTGAAAAGGGAAGATTTTGAAGCAAGGAAAGCGGCTATAGAG
ATTGCAAGACTGGCTGAAAGAGCTCAGCAAAAGACGCTAACAAGTGCTGGTAAAGACCTACAAGATAATT
TTCTGACGGCCCTGGCAATGAGAGAAGAAGACAATCGCAGTGGAAAACTGAGTTCCGTGATCTTTATTCG
TGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGACTATGCCCACAGGCTAAAGACGGAAGAT
TTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGGG
ACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACT
TTTCAGATACAAAAGAGACAGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACT
AGAATCACTATCCTGACAGAACTCTACGTACAAGCTGTCATTTTTGACCACATTTCCAGAAGGAAGACTT
AA

Translation (233 aa):
MDQEEGLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEARKAAIE
IARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRNSHGQEISGYIDYAHRLKTED
FEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRDRKILNVDPKAQPGDNST
RITILTELYVQAVIFDHISRRKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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