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Report for CCDS3582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3582.1 Public Homo sapiens 4 CXCL13 24 110 108 CCDS HistoryNCBI Gene:10563Re-query CCDS DB by CCDS ID:3582.1Re-query CCDS DB by GeneID:10563See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286758.4 ENSP00000286758.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286758.4Link to Ensembl Protein Viewer:ENSP00000286758.4Re-query CCDS DB by Nucleotide ID:ENST00000286758Re-query CCDS DB by Protein ID:ENSP00000286758
Original member Current member EBI ENST00000682537.1 ENSP00000507688.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682537.1Link to Ensembl Protein Viewer:ENSP00000507688.1Re-query CCDS DB by Nucleotide ID:ENST00000682537Re-query CCDS DB by Protein ID:ENSP00000507688
Original member Current member NCBI NM_001371558.1 NP_001358487.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371558.1Link to Protein Sequence:NP_001358487.1Re-query CCDS DB by Nucleotide ID:NM_001371558Re-query CCDS DB by Protein ID:NP_001358487Link to BLAST:NP_001358487.1
Original member Current member NCBI NM_006419.3 NP_006410.1 Accepted alive Link to Nucleotide Sequence:NM_006419.3Link to Protein Sequence:NP_006410.1Re-query CCDS DB by Nucleotide ID:NM_006419Re-query CCDS DB by Protein ID:NP_006410Link to BLAST:NP_006410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358487.1 109 O43927 109 100% 0 0
NP_006410.1 109 O43927 109 100% 0 0

Chromosomal Locations for CCDS 3582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 77605866 77605929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77607703 77607835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77610614 77610694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77610988 77611039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGAAGTTCATCTCGACATCTCTGCTTCTCATGCTGCTGGTCAGCAGCCTCTCTCCAGTCCAAGGTGTTC
TGGAGGTCTATTACACAAGCTTGAGGTGTAGATGTGTCCAAGAGAGCTCAGTCTTTATCCCTAGACGCTT
CATTGATCGAATTCAAATCTTGCCCCGTGGGAATGGTTGTCCAAGAAAAGAAATCATAGTCTGGAAGAAG
AACAAGTCAATTGTGTGTGTGGACCCTCAAGCTGAATGGATACAAAGAATGATGGAAGTATTGAGAAAAA
GAAGTTCTTCAACTCTACCAGTTCCAGTGTTTAAGAGAAAGATTCCCTGA

Translation (109 aa):
MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKK
NKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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