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Report for CCDS35781.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35781.2 Public Mus musculus 1 Casq1 23 108 98 CCDS HistoryNCBI Gene:12372Re-query CCDS DB by CCDS ID:35781.2Re-query CCDS DB by GeneID:12372See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 35781.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35781.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003554.10 ENSMUSP00000003554.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003554.10Link to Ensembl Protein Viewer:ENSMUSP00000003554.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003554Re-query CCDS DB by Protein ID:ENSMUSP00000003554
Original member Current member NCBI NM_009813.2 NP_033943.2 Accepted alive Link to Nucleotide Sequence:NM_009813.2Link to Protein Sequence:NP_033943.2Re-query CCDS DB by Nucleotide ID:NM_009813Re-query CCDS DB by Protein ID:NP_033943Link to BLAST:NP_033943.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033943.2 405 O09165 405 100% 0 0

Chromosomal Locations for CCDS 35781.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172210345 172210503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172211948 172212022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172213028 172213128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172213337 172213391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172213806 172213851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172215012 172215142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172215477 172215550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172215909 172216020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172216794 172216894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172217890 172217974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172219412 172219690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGAGAGCTACCGACAGGATGGGGGCCAGAGCAGTGTCCGAGCTGCGGCTGGCACTGCTGTTTGTACTGG
TGCTAGGGACGCCCAGGTTAGGGGTCCAGGGGGAAGATGGGTTGGACTTCCCTGAGTACGACGGTGTGGA
CCGTGTGATCAATGTGAACGCCAAGAACTACAAGAACGTGTTTAAGAAGTATGAGGTGCTGGCCCTCCTC
TACCATGAGCCCCCCGAGGACGACAAGGCCTCGCAGAGACAATTTGAGATGGAGGAGCTAATCCTGGAGT
TAGCAGCCCAAGTCTTAGAAGACAAGGGTGTTGGCTTTGGCCTGGTGGACTCAGAGAAGGATGCAGCTGT
GGCCAAGAAACTAGGACTAACTGAAGAAGACAGCGTTTATGTGTTCAAAGGAGATGAAGTCATTGAATAT
GACGGCGAGTTTTCTGCAGACACTCTGGTGGAGTTTCTGCTTGATGTCCTAGAAGACCCTGTAGAGTTGA
TTGAAGGTGAACGAGAGCTGCAGGCATTTGAGAATATTGAAGATGAAATCAAACTCATTGGCTACTTCAA
GAGCAAAGACTCAGAGCATTACAAAGCCTACGAGGACGCAGCTGAAGAGTTCCATCCCTACATCCCTTTC
TTCGCTACCTTCGACAGCAAGGTGGCAAAGAAGCTGACTCTGAAGTTGAATGAGATTGATTTCTACGAGG
CCTTCATGGAAGAGCCTATGACCATCCCAGACAAGCCCAACAGTGAAGAGGAGATTGTCAGCTTCGTGGA
GGAGCACAGGAGATCAACCCTGAGGAAACTGAAGCCTGAGAGTATGTACGAGACTTGGGAGGATGACCTG
GATGGAATCCACATTGTCGCCTTTGCAGAGGAAGCAGATCCCGATGGCTATGAGTTCTTAGAGACTCTCA
AGGCTGTGGCCCAAGACAACACTGAGAACCCCGACCTCAGTATCATCTGGATTGATCCTGATGACTTCCC
GCTGCTGGTCCCGTACTGGGAGAAGACCTTTGACATTGACCTGTCAGCTCCACAAATAGGAGTTGTCAAT
GTTACAGACGCCGACAGCATATGGATGGAGATGGATAACGAGGAGGACCTGCCTTCTGCTGATGAGCTGG
AGGACTGGCTGGAGGACGTGCTGGAGGGCGAGATCAACACAGAGGATGACGACGACGATGACGACGATGA
CGATGACGATGATGATGACGACGACTAG

Translation (405 aa):
MRATDRMGARAVSELRLALLFVLVLGTPRLGVQGEDGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALL
YHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSVYVFKGDEVIEY
DGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKSKDSEHYKAYEDAAEEFHPYIPF
FATFDSKVAKKLTLKLNEIDFYEAFMEEPMTIPDKPNSEEEIVSFVEEHRRSTLRKLKPESMYETWEDDL
DGIHIVAFAEEADPDGYEFLETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVN
VTDADSIWMEMDNEEDLPSADELEDWLEDVLEGEINTEDDDDDDDDDDDDDDDDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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