NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35688.1 Public Mus musculus 1 Dsel 23 108 98 CCDS HistoryNCBI Gene:319901Re-query CCDS DB by CCDS ID:35688.1Re-query CCDS DB by GeneID:319901See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035462.6 ENSMUSP00000043570.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035462.6Link to Ensembl Protein Viewer:ENSMUSP00000043570.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035462Re-query CCDS DB by Protein ID:ENSMUSP00000043570
Original member NCBI NM_001081316.1 NP_001074785.1 Updated not alive Link to Nucleotide Sequence:NM_001081316.1Link to Protein Sequence:NP_001074785.1Re-query CCDS DB by Nucleotide ID:NM_001081316Re-query CCDS DB by Protein ID:NP_001074785
Current member NCBI NM_001081316.2 NP_001074785.1 Accepted alive Link to Nucleotide Sequence:NM_001081316.2Link to Protein Sequence:NP_001074785.1Re-query CCDS DB by Nucleotide ID:NM_001081316Re-query CCDS DB by Protein ID:NP_001074785Link to BLAST:NP_001074785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074785.1 1207 Q0VBN2 1207 100% 0 0

Chromosomal Locations for CCDS 35688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111859180 111862803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGGCGTTTATGTTTACAGAACATTTACTATTTTTAACATTGATGATGTGTAGTTTTTCTACTTGTGAAG
AA
TCTGTGAGCAATTATTCTGAATGGGCAGTTTTCACAGACGATATACAATGGCTTAAGTCACAGAAAAT
A
CAAGATTTCAAACTCAACCGAAGACTTCATCCAAATTTATATTTTGATGCTGGAGATATACAAACATTG
AAA
CAAAAGTCTCGTACAAGCCATTTGCATATTTTTAGAGCTATCAAAAGTGCAGTGACAATTATGCTGT
CC
AATCCATCATACTACCTACCTCCACCCAAGCATGCTGAGTTTGCTGCCAAGTGGAATGAAATTTATGG
T
AATAATCTTCCTCCTTTAGCATTGTATTGTTTATTATGCCCAGAAGACAAGGTTGCCTTTGAATTTGTT
ATG
GAATACATGGATCGGATGGTTAGCTACAAAGACTGGCTAGTTGAGAATGCACCAGGGGATGAGGTTC
CA
GTTGGCCATTCTTTAACAGGTTTTGCCACTGCCTTTGACTTTTTATATAATCTATTAGGTAATCAGCG
T
AAACAAAAATACCTAGAAAAAATTTGGATTGTTACTGAGGAAATGTATGAATATTCCAAGATTCGATCA
TGG
GGCAAACAACTTCTTCATAACCATCAAGCTACAAATATGATAGCTTTACTCATAGGGGCCTTGGTTA
CT
GGAGTAGATAAAGGATCTAAAGCAAACATATGGAAACAAGTTGTTGTTGATGTGATGGAAAAGACTAT
G
TTTCTCTTGAAGCATATTGTAGATGGCTCATTGGATGAAGGTGTGGCCTATGGAAGCTATACCTCAAAA
TCA
GTTACACAGTATGTTTTTTTGGCACAACGCCATTTTAACATCAACAACTTTGATAATAACTGGCTAA
AA
ATGCATTTTTGGTTTTATTATGCTACACTTTTGCCAGGCTATCAAAGAACTGTAGGCATAGCAGATTC
C
AATTATAATTGGTTTTATGGTCCAGAGAGCCAGCTAGTTTTCTTGGATAAGTTCATTTTACAGAATGGA
GCT
GGAAATTGGTTAGCTCAGCAAATTAGAAAGCATCGACCTAAGGATGGACCAATGGTTCCTTCCACTG
CT
CAGCGGTGGAGTACTCTTCATACTGAATACATCTGGTATGATCCAACACTCACCCCACAGCCTCCTGT
T
GATTTTGGCACTGCAAAAATGCACACATTTCCTAACTGGGGTGTCGTGACTTATGGGGGTGGGCTGCCA
AAC
ACCCAGACCAATACCTTTGTGTCTTTTAAATCTGGGAAACTGGGAGGACGAGCTGTGTATGACATAG
TT
CACTTTCAGCCATATTCCTGGATTGATGGATGGAGAAGCTTTAACCCAGGACATGAACATCCAGATCA
A
AATTCATTTACTTTCGCTCCTAATGGGCAGGTATTCGTTTCTGAGGCTCTTTATGGACCAAAATTGAGC
CAC
CTTAACAACGTATTGGTGTTTGCCCCATCACCATCAAGTCAATGTAATCAGCCCTGGGAAGGTCAAC
TG
GGAGAATGTGCACAGTGGCTCAAGTGGACTGGGGAAGAGGTTGGTGATGCAGCTGGGGAAGTTATTAC
T
GCTGCTCAACATGGTGATAGGATGTTTGTGAGTGGGGAAGCAGTGTCTGCTTATTCTTCTGCCATGAGA
CTG
AAAAGTGTCTATCGTGCTTTACTTCTTTTAAATTCACAAACTCTGCTTGTTGTCGATCATATTGAAA
GG
CAAGAAACTTCCCCAATAAATTCTGTCAGTGCCTTCTTTCATAATTTGGATATTGATTTTAAATACAT
C
CCATACAAGTTTATGAATAGATATAATGGTGCCATGATGGATGTGTGGGATGCACACTATAAAATGTTT
TGG
TTTGATCACCATGGCAACAGTCCTGTGGCTAATATACAGGAAGCAGAACAGGCTGCTGAATTTAAGA
AA
CGGTGGACACAGTTTGTTAATGTTACATTTCATATGGAATCCACAATCACAAGAATTGCTTATGTATT
T
TATGGGCCATATGTCAATGTTTCCAGCTGCAGATTTATTGATAGTTCCAGTTCTGGACTTCAGATTTCT
TTA
CATGTCAACAGTACTGAACATAGTGTGTCTGTTGTAACTGACTATCAAAACCTTAAAAGCAGATTCA
GT
TACCTGGGATTTGGTGGTTTTGCCAGTGTGGCTAATCAAGGACAGATAACCAGATTTGGTTTGGGTAC
T
CAAGAAATAGTAAACCCTGTAAGACATGATAAAGTTAATTTCCCCTTTGGGTTTAAATTTAATATAGCA
GTT
GGATTCATTTTGTGTATTAGTTTGGTTATTTTAACTTTTCAATGGCGGTTTTACCTTTCCTTTAGAA
AG
CTAATGCGCTGTGTATTAATACTTGTTATTGCCTTGTGGTTTATTGAGCTTCTGGATGTATGGAGTAC
A
TGCACTCAGCCCATCTGTGCAAAATGGACAAGGACTGAAGCTAAGGCAAATGAGAAGGTCATGATTTCT
GAA
GGGCATCATGTGGATCTTCCTAATGTTATTATTACCTCACTCCCTGGTTCAGGAGCTGAAATTCTCA
AA
CAGCTTTTTTTCAACAGCAGTGATTTTCTCTACATCAGAATTCCTACAGCCTACATGGATATCCCTGA
A
ACTGAATTTGAAATTGACTCATTTGTAGATGCTTGTGAGTGGAAAGTATCAGATATCCGCAGTGGGCAC
TTT
CATCTTCTTCGAGGGTGGCTGCAGTCTTTGGTCCAGGATACAAAACTTCACTTGCAAAACATCCATC
TA
CATGAAACCAGTAGGAGTAAACTGGCCCAATATTTTACAACTAATAAGGACAAAAAGCGAAAATTAAA
A
AGAAGGGAGTCTTTGCAAGATCAAAGAAGTAGAATAAAAGGACCATTTGATAGAGATGCTGAATATATT
AGG
GCTTTAAGAAGACACCTTGTTTATTACCCAAGTGCACGTCCTGTGCTCAGCTTAAGTAGTGGTAGCT
GG
ACATTGAAGCTTCATTTTTTTCAGGAAGTTTTAGGAACTTCAATGCGGGCATTGTACATAGTAAGAGA
C
CCTCGAGCTTGGATCTATTCAGTGCTATATGGTAGTAAACCAAGTCTTTATTCTTTGAAGAATGTACCA
GAG
CACTTAGCAAAATTGTTTAAAATAGAGGAAGGTAAAAGCAAATGTAATTCGAATTCTGGCTATGCTT
TT
GAGTATGAATCACTGAAGAAAGAATTAGAAATATCCCAATCAAATGCTATCTCCTTATTATCTCATTT
G
TGGGTAGCAAACACTGCAGCAGCCTTGAGAATAAATACAGATTTGCTGCCTACCAATTACCATCTGGTC
AAG
TTTGAAGATATTGTTCATTTTCCTCAGAAGACTACTGAAAGGATTTTTGCTTTCCTTGGCATTCCTT
TG
TCTCCTGCTAGTTTAAACCAAATGCTATTTGCCACTTCCACAAACCTTTTTTATCTTCCATATGAGGG
G
GAAATATCACCATCTAATACTAATATTTGGAAAACAAACTTGCCTAGAGATGAAATTAAACTAATTGAA
AAC
ATTTGCTGGACACTGATGGATCATCTAGGATATCCAAAGTTTATGGACTAA


Translation (1207 aa):
MAFMFTEHLLFLTLMMCSFSTCEESVSNYSEWAVFTDDIQWLKSQKIQDFKLNRRLHPNLYFDAGDIQTL
K
QKSRTSHLHIFRAIKSAVTIMLSNPSYYLPPPKHAEFAAKWNEIYGNNLPPLALYCLLCPEDKVAFEFV
M
EYMDRMVSYKDWLVENAPGDEVPVGHSLTGFATAFDFLYNLLGNQRKQKYLEKIWIVTEEMYEYSKIRS
W
GKQLLHNHQATNMIALLIGALVTGVDKGSKANIWKQVVVDVMEKTMFLLKHIVDGSLDEGVAYGSYTSK
S
VTQYVFLAQRHFNINNFDNNWLKMHFWFYYATLLPGYQRTVGIADSNYNWFYGPESQLVFLDKFILQNG
A
GNWLAQQIRKHRPKDGPMVPSTAQRWSTLHTEYIWYDPTLTPQPPVDFGTAKMHTFPNWGVVTYGGGLP
N
TQTNTFVSFKSGKLGGRAVYDIVHFQPYSWIDGWRSFNPGHEHPDQNSFTFAPNGQVFVSEALYGPKLS
H
LNNVLVFAPSPSSQCNQPWEGQLGECAQWLKWTGEEVGDAAGEVITAAQHGDRMFVSGEAVSAYSSAMR
L
KSVYRALLLLNSQTLLVVDHIERQETSPINSVSAFFHNLDIDFKYIPYKFMNRYNGAMMDVWDAHYKMF
W
FDHHGNSPVANIQEAEQAAEFKKRWTQFVNVTFHMESTITRIAYVFYGPYVNVSSCRFIDSSSSGLQIS
L
HVNSTEHSVSVVTDYQNLKSRFSYLGFGGFASVANQGQITRFGLGTQEIVNPVRHDKVNFPFGFKFNIA
V
GFILCISLVILTFQWRFYLSFRKLMRCVLILVIALWFIELLDVWSTCTQPICAKWTRTEAKANEKVMIS
E
GHHVDLPNVIITSLPGSGAEILKQLFFNSSDFLYIRIPTAYMDIPETEFEIDSFVDACEWKVSDIRSGH
F
HLLRGWLQSLVQDTKLHLQNIHLHETSRSKLAQYFTTNKDKKRKLKRRESLQDQRSRIKGPFDRDAEYI
R
ALRRHLVYYPSARPVLSLSSGSWTLKLHFFQEVLGTSMRALYIVRDPRAWIYSVLYGSKPSLYSLKNVP
E
HLAKLFKIEEGKSKCNSNSGYAFEYESLKKELEISQSNAISLLSHLWVANTAAALRINTDLLPTNYHLV
K
FEDIVHFPQKTTERIFAFLGIPLSPASLNQMLFATSTNLFYLPYEGEISPSNTNIWKTNLPRDEIKLIE
N
ICWTLMDHLGYPKFMD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser