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Report for CCDS35583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35583.1 Public Mus musculus 1 Als2 23 108 98 CCDS HistoryNCBI Gene:74018Re-query CCDS DB by CCDS ID:35583.1Re-query CCDS DB by GeneID:74018See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027178.12 ENSMUSP00000027178.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027178.12Link to Ensembl Protein Viewer:ENSMUSP00000027178.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027178Re-query CCDS DB by Protein ID:ENSMUSP00000027178
Original member Current member EBI ENSMUST00000163058.1 ENSMUSP00000125753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163058.1Link to Ensembl Protein Viewer:ENSMUSP00000125753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163058Re-query CCDS DB by Protein ID:ENSMUSP00000125753
Original member Current member NCBI NM_001159948.2 NP_001153420.2 Accepted alive Link to Nucleotide Sequence:NM_001159948.2Link to Protein Sequence:NP_001153420.2Re-query CCDS DB by Nucleotide ID:NM_001159948Re-query CCDS DB by Protein ID:NP_001153420Link to BLAST:NP_001153420.2
Original member Current member NCBI NM_028717.6 NP_082993.4 Accepted alive Link to Nucleotide Sequence:NM_028717.6Link to Protein Sequence:NP_082993.4Re-query CCDS DB by Nucleotide ID:NM_028717Re-query CCDS DB by Protein ID:NP_082993Link to BLAST:NP_082993.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153420.2 1651 Q920R0-1 1651 100% 0 0
NP_082993.4 1651 Q920R0-1 1651 100% 0 0

Chromosomal Locations for CCDS 35583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59164177 59164215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59167183 59167279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59167463 59167612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59168151 59168212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59168389 59168434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59169837 59170013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59170437 59170559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59173156 59173313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59174924 59175041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59178532 59178699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59179060 59179193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59180106 59180183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59180549 59180660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59183164 59183328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59183781 59183879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59185213 59185278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59185397 59185599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59186012 59186078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59186456 59186526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59187321 59187449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59187735 59187866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59191889 59192051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59194033 59194098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59196191 59196371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59199020 59199191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59202915 59203097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59206519 59206596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59207760 59207856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59208949 59209117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59211131 59211488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59215102 59216021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59217927 59218081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59220375 59220394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4956 nt):
ATGGACTCAAAGAAGAAAAGCTCAACAGAGGCAGAAGGATCCAAAGAAAGAGGCCTAGTCCATGTCTGGC
AGGCAGGATCCTTTTCTCTAACACCAGAGAGGTTGCCAGGCTGGGGTGGAAAGACAGTTCTTCAGGCAGC
CCTTGGTGTGAGGCATGGAGTTCTTCTGACTGAAGATGGTGAGGTCTACAGCTTTGGGACTCTTCCCTGG
AAAAGTGAATCAGCAGAAATTTGTCCAAGCAGCCCCCTTCTAGAAAGTGCCCTGGTTGGGCATCATGTTA
TTACTGTGGCAACAGGGAGCTTCCACAGTGGAGCAGTGACAGAGAGCGGGGTGGTGTACATGTGGGGAGA
GAATGCTGCCGGGCAGTGTGCGGTAGCTAACCAGCAGTATGTGCCGGAGCCGAGTCCTGTCAGCATTTCT
GACTCGGAGACCAGCCCGTCATTAGCAGTTAGGATTCTGCAATTGGCATGTGGCGAGGAACACACACTGG
CATTGTCACTCAGCAGAGAGATCTGGGCATGGGGCACCGGCTGTCAGCTGGGCCTCATCACCACCACTTT
CCCAGTGACAAAGCCACAGAAGGTGGAACACCTTGCTGGACGCGTGGTGCTCCAGGTGGCCTGCGGTGCA
TTCCACAGCCTTGCACTTGTGCAGTGCCTCCCTCCTCAGGATCTGAAGCCAGTCCCAGAGAGATGCAATC
AGTGCAGCCAGCTGCTCATCACCATGACAGACAAAGAGGACCATGTGATAATATCGGACAGCCATTGCTG
CCCTTTAGGTGTGACATTGTCCGAGTCTCAAGCAGAAAAGCATGCCAGCCCTGCTCCCAGCCCTCACCCA
GAGGCACTGGATGAGCAGGGAGAGGTGTTTGAGAACACGGTGGTAGAAGCTGAACTGAACATGGGAAGCA
GTCAGACCACAAGTGGCAGTGCCATTTCCACCCAGCAGAACGTCGTGGGAACAGCTGAAGTGTCTTCTGC
CAGAACAGCTCCGTCATACCCAGACACCCATGCGGTAACTGCATACCTGCAGAAGCTGTCAGAGCATTCG
ATGAGGGAGAACCATGAGCCTGGAGAAAAGCCACCCCAGGTCCAGCCTCTTGTAGAAGAAGCAGTTCCTG
ATCTTCACAGTCCACCAACCACAAGCACCTCAGCCCTCAACAGCTTGGTGGTCTCCTGTGCATCTGCTGT
TGGTGTCAGAGTGGCTGCCACCTATGAAGCTGGGGCCTTGTCTCTCAAGAAAGTTATGAACTTTTACAGC
ACTGCCCCCTGCGAGACGGCAGCTCAGTCGGGCAGTGCCTCCACAGGCCCAGAAAGTCTGAAAGATCTCC
GAGAAGAGCAGGTGAAACAGGAGTCACTGCAAGGGAAGAAAAGCTCAAGTCTCATGGACATCAGAGAGGA
GGAGTTGGAGGGAGGGAGTCGAAGACTCTCCCTCCCAGGGTTGTTGTCGCAAGTTTCCCCCAGGCTCTTA
AGGAAGGCTGCGAGGGTGAAAACTCGGACAGTGGTTCTGACTCCCACATACAGTGGAGAAGCAGATGCCC
TTCTGCCTTCCCTGAGGACAGAGGTGTGGACCTGGGGGAAAGGCAAGGAAGGGCAGCTAGGGCACGGCGA
CGTCCTGCCCAGGCTTCAGCCGTTGTGTGTCAAGTGTCTGGATGGTAAAGAGGTAATCCACCTGGAGGCG
GGCGGCTCCCACTCCCTCGCACTCACTGCGAAATCTCAGGTTTACTCATGGGGCAGTAATACCTTTGGTC
AGCTTGGGCATTCTGAGTTTCCAACAACGGTTCCTCGACTCTCAAAGGTTAGCAGTGAAAATGGAGTCTG
GAGTGTAGCTGCAGGCCAAGATTATTCCTTGTTTTTAGTGGACACGGAAGACTTCCAGCCTGGGTTGTAT
TACAGTGGCCGACAGGACCGTGCAGAAGGTGATACCCTGCCAGAGAATCCCAGTGGTACAAAGACTCCAG
TACTTCTCTCCTGTAGTAAGCTTGGATACATAAGCAGAGTAACAGCAGGAAAAGATAGCTATCTAGCCTT
GGTGGATAAGAACATCATGGGATACATCGCCAGTCTCCATGAGTTGGCTTCTACAGAAAGACGGTTTTAC
TCAAAACTGAGCGAAATCAAATCACAGATACTTAGGCCTCTTCTCAGTTTAGAAAATTTGGGCACAGTGA
CCACTGTCCAGCTGTTGCAGGAAGTTGCCAGCCGGTTCAGCAAGTTGTGTTACCTCATTGGGCAGCATGG
AGCCTCACTAAGCAGCTACCTACAGGGCATGAAGGAAGCCAGCAGCCTGGTCATCATGAAGCACTCAAGT
CTTTTCCTGGACAGCTACACAGAGTACTGCACATCAGTTTCAAATTTCCTGGTTATGGGAGGATTCCAGC
TTCTTGCTAAGCCTGCCATTGATTTCCTAAATAAAAACCAAGAACTCTTGCAAGATTTGTCAGAAGTGAA
TGATGAGAACACTCAGTTGATGGAAATCCTGAACATGCTGTTTTTCTTGCCAATCAGACGACTTCATAAT
TATGCAAAAGTTTTGCTAAAGCTTGCCACTTGCTTTGAAGTGACATCTCCAGAGTATCAAAAGCTGCAGG
ATTCCAGTTCTTGCTATGAGTCTCTTGCTCTCCATCTTGGCAAGAAGAGGAAGGAAGCAGAGTACACACT
GAGCTTCTGGAAGACCTTTCCTGGGAAAATGACGGATTCCTTGAGGAAGCCAGAGCGCCGGCTGCTGTGT
GAGAGCAGTAACCGAGCCCTCTCCCTGCAGCATGCCGGCAGGTTTTCTGTGAATTGGTTCATTCTCTTCA
ATGATGCCCTGGTCCATGCTCAGTTCTCTACACACCACGTGTTCCCTTTGGCCACACTCTGGGCAGAGCC
ACTTTCTGAAGAAGCTGGTAGCGTGAATGGCTTAAAGATAACTACACCTGAAGAACAATTCACACTCATT
TCTTCAACACCCCAGGAAAAGACCAAGTGGCTTCGGGCTATCAGCCAAGCTGTGGATCAGGCTTTGAGGG
GGACGTCCGATTTCCCACTTTACGGAGGCGGCAGCAGTGTTCAGAGACAGGAACCACCCATCTCAAGAAG
TGCCAAATACACTTTCTACAAGGATACTCGCCTAAAGGATGCCACTTACGATGGGCGCTGGCTTTCAGGG
AAGCCTCATGGCAGGGGTGTTCTGAAGTGGCCTGATGGAAAGATGTACTCTGGCATGTTCAGGAATGGCT
TGGAAGATGGATATGGTGAATACAGAATCCCTAACAAGGCCCTGAACAAAGAAGACCATTATGTAGGCCA
TTGGAAAGAGGGGAAAATGTGTGGGCAAGGAGTCTACAGCTATGCCTCTGGTGAAGTGTTTGAAGGCTGC
TTTCAAGATAACATGCGCCATGGGCATGGTCTGCTCCGGAGTGGAAAACTGACTTCTTCTTCTCCTAGCA
TGTTCATTGGCCAGTGGGTAATGGATAAGAAAGCAGGATATGGCGTCTTTGATGATATCACCAGGGGAGA
AAAGTACATGGGAATGTGGCAGGATGATGTGTGCCAAGGGAATGGGGTAGTAGTCACCCAGTTTGGGTTA
TACTACGAAGGCAACTTCCACCTGAATAAGATGATGGGAAATGGGGTTTTGCTTTCTGAAGATGATACCA
TCTATGAAGGAGAATTTTCCGATGACTGGACACTTAGTGGAAAGGGAACGCTGACTATGCCACATGGAGA
TTATATTGAAGGTTATTTTAGTGGAGAATGGGGATCTGGGATAAAAATCACTGGGACCTACTTCAAACCT
AGCCTGTATGAGAGCGATAAGGACAAGCCCAAAGCCTTCAGGAAGCTGGGGAACCTGGCCGTGGCAGCAG
ACGAGAAATGGAGAGCAGTGTTTGAAGAATGCTGGCGCCAGCTGGGCTGTGAGAGCCCAGGCCAAGGGGA
GGTTTGGAAAGCATGGGATAATATTGCTGTGGCCTTGACCACGAACCGTCGCCAGCATAAAGACAGTCCA
GAAATACTAAGCCGCTCTCAGACTCAGACCCTGGAGAGTTTGGAGTACATTCCCCAGCACATTGGCGCCT
TCTCTGTGGAGAAATATGATGACATCAAGAAGTATTTAATAAAGGCCTGTGATACTCCTCTGCACCCACT
GGGCAGGCTTGTGGAGACCCTGGTTGCGGTGTATAGAATGACATATGTGGGTGTAGGGGCCAACCGCCGG
TTACTGCAGGAAGCTGTGAAGGAGATTAAATCTTATCTCAAGAGGATTTTCCAGCTTGTGAGGTTCTTGT
TTCCTGAGCTTCCTGAGGAGGGCAGCACAATTCCTCTTTCTGCTCCTCTGCCCACTGGAAGGAGATCCTT
CTGTACTGGAAAATCGGATTCCAGATCCGAGTCACCAGAACCAGGTTATGTAGTAACAAGTTCTGGCTTA
CTGCTTCCGGTGCTGCTGCCACGGCTCTACCCACCTCTCTTCATGCTCTATGCCCTGGATAATGACCGAG
AGGAAGACATTTACTGGGAATGTGTGCTTCGACTAAACAAGCAGCCAGATATTGCTCTCTTGGGCTTCCT
TGGAGTACAGAAAAAATTCTGGCCAGCCACCTTGTCAATCCTTGGAGAGAGTAAAAAGGTGTTGTCAACC
ACAAAGGATGCTTGCTTTGCATCTGCAGTAGAATGCCTGCAGCAGATCAGCACAACATTTACTCCATCAG
ACAAGCTTAAAGTGATCCAGCAGACCTTTGAAGAGATCTCCCAGAGTGTCCTTGCATCGCTGCAGGAGGA
CTTCCTCTGGTCCATGGATGACTTGTTCCCCGTCTTCTTATACGTGGTGCTGCGGGCCAGGATTCGGAAC
TTGGGCTCTGAAGTTCACCTCATTGAGGATCTGATGGACCCCTTTCTCCAGCATGGGGAACAAGGCATCA
TGTTCACCACCTTGAAGGCCTGTTACTTCCAGATTCAGCGGGAGAAGCTTAACTAG

Translation (1651 aa):
MDSKKKSSTEAEGSKERGLVHVWQAGSFSLTPERLPGWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPW
KSESAEICPSSPLLESALVGHHVITVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVPEPSPVSIS
DSETSPSLAVRILQLACGEEHTLALSLSREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGA
FHSLALVQCLPPQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAEKHASPAPSPHP
EALDEQGEVFENTVVEAELNMGSSQTTSGSAISTQQNVVGTAEVSSARTAPSYPDTHAVTAYLQKLSEHS
MRENHEPGEKPPQVQPLVEEAVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYS
TAPCETAAQSGSASTGPESLKDLREEQVKQESLQGKKSSSLMDIREEELEGGSRRLSLPGLLSQVSPRLL
RKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEA
GGSHSLALTAKSQVYSWGSNTFGQLGHSEFPTTVPRLSKVSSENGVWSVAAGQDYSLFLVDTEDFQPGLY
YSGRQDRAEGDTLPENPSGTKTPVLLSCSKLGYISRVTAGKDSYLALVDKNIMGYIASLHELASTERRFY
SKLSEIKSQILRPLLSLENLGTVTTVQLLQEVASRFSKLCYLIGQHGASLSSYLQGMKEASSLVIMKHSS
LFLDSYTEYCTSVSNFLVMGGFQLLAKPAIDFLNKNQELLQDLSEVNDENTQLMEILNMLFFLPIRRLHN
YAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGKKRKEAEYTLSFWKTFPGKMTDSLRKPERRLLC
ESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGSVNGLKITTPEEQFTLI
SSTPQEKTKWLRAISQAVDQALRGTSDFPLYGGGSSVQRQEPPISRSAKYTFYKDTRLKDATYDGRWLSG
KPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGC
FQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDVCQGNGVVVTQFGL
YYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPHGDYIEGYFSGEWGSGIKITGTYFKP
SLYESDKDKPKAFRKLGNLAVAADEKWRAVFEECWRQLGCESPGQGEVWKAWDNIAVALTTNRRQHKDSP
EILSRSQTQTLESLEYIPQHIGAFSVEKYDDIKKYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRR
LLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTGRRSFCTGKSDSRSESPEPGYVVTSSGL
LLPVLLPRLYPPLFMLYALDNDREEDIYWECVLRLNKQPDIALLGFLGVQKKFWPATLSILGESKKVLST
TKDACFASAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRN
LGSEVHLIEDLMDPFLQHGEQGIMFTTLKACYFQIQREKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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