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Report for CCDS35508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35508.1 Public Mus musculus 1 Pcmtd1 23 108 98 CCDS HistoryNCBI Gene:319263Re-query CCDS DB by CCDS ID:35508.1Re-query CCDS DB by GeneID:319263See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061280.16 ENSMUSP00000059261.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061280.16Link to Ensembl Protein Viewer:ENSMUSP00000059261.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000061280Re-query CCDS DB by Protein ID:ENSMUSP00000059261
Original member Current member NCBI NM_183028.3 NP_898849.1 Accepted alive Link to Nucleotide Sequence:NM_183028.3Link to Protein Sequence:NP_898849.1Re-query CCDS DB by Nucleotide ID:NM_183028Re-query CCDS DB by Protein ID:NP_898849Link to BLAST:NP_898849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898849.1 357 P59913 357 100% 0 0

Chromosomal Locations for CCDS 35508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 7120309 7120615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7147637 7147739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7160892 7161063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7163248 7163371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7169515 7169882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAATTGATAACCTTAAAGAAGCTCAGTACA
TCCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATTGACCGCGGAGATTACTATCTGGAAGGCTACCG
AGACAATGCTTACAAAGACTTAGCCTGGAAGCACGGGAACATACACTTGTCAGCACCTTGCATTTATTCT
GAAGTTATGGAAGCTTTGAAACTTCAACCAGGATTATCTTTTCTTAACCTGGGAAGTGGAACCGGATATT
TAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAATAAATCATGGGATTGAACTTCATTCAGATGT
GGTGGAGTATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAAATTTGAATTC
TGTGAACCCGCATTTGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAGTCATCAGTATGATCGAATTT
ACTGTGGAGCTGGAGTCCAGAAAGACCACGAAAACTACATGAAGATCTTACTCAAAGTTGGGGGCATATT
GGTCATGCCTATAGAGGATCAGTTGACACAGATTATGCGGACTGGACAAAACACTTGGGAAAGTAAAAAT
ATCCTTGCGGTTTCCTTTGCACCACTAGTACAGCCTAGTAAGAATGATAATGGCACACCGGACTCTGTGG
GGCTCCCTCCATGTGCTGTCAGGAATCTCCAAGACTTGGCTCGCATTTACATTCGACGTACACTTAGAAA
CTTCATAAATGATGAGATGCAGGCCAAGGGGATTCCACAAAGGGCTCCACCCAAGAGGAAAAGAAAGAGA
GTTAAACAGAGAATTAATACTTACGTATTTGTGGGTAATCAGCTTATCCCTCAGCCTCTAGACAGTGAAG
AGGATGAAAAAATGGAAGAAGACAGCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGA
GGAACCACCTCAGAACCTACTGAGGGAAAAGATAATGAAGCTGCCACTCCCAGAGTCTTTAAAGGCTTAC
TTGACATATTTTCGAGACAAATAA

Translation (357 aa):
MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYS
EVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDKFEF
CEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKN
ILAVSFAPLVQPSKNDNGTPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKR
VKQRINTYVFVGNQLIPQPLDSEEDEKMEEDSKEEEEKEHIEAMKREEPPQNLLREKIMKLPLPESLKAY
LTYFRDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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