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Report for CCDS3537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3537.1 Public Homo sapiens 4 FDCSP 24 110 108 CCDS HistoryNCBI Gene:260436Re-query CCDS DB by CCDS ID:3537.1Re-query CCDS DB by GeneID:260436See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317987.6 ENSP00000318437.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317987.6Link to Ensembl Protein Viewer:ENSP00000318437.5Re-query CCDS DB by Nucleotide ID:ENST00000317987Re-query CCDS DB by Protein ID:ENSP00000318437
Original member Current member NCBI NM_152997.4 NP_694542.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152997.4Link to Protein Sequence:NP_694542.1Re-query CCDS DB by Nucleotide ID:NM_152997Re-query CCDS DB by Protein ID:NP_694542Link to BLAST:NP_694542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694542.1 85 Q8NFU4 85 100% 0 0

Chromosomal Locations for CCDS 3537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70231195 70231251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70232994 70233026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70234020 70234187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGAAGAAAGTTCTCCTCCTGATCACAGCCATCTTGGCAGTGGCTGTTGGTTTCCCAGTCTCTCAAGACC
AGGAACGAGAAAAAAGAAGTATCAGTGACAGCGATGAATTAGCTTCAGGGTTTTTTGTGTTCCCTTACCC
ATATCCATTTCGCCCACTTCCACCAATTCCATTTCCAAGATTTCCATGGTTTAGACGTAATTTTCCTATT
CCAATACCTGAATCTGCCCCTACAACTCCCCTTCCTAGCGAAAAGTAA

Translation (85 aa):
MKKVLLLITAILAVAVGFPVSQDQEREKRSISDSDELASGFFVFPYPYPFRPLPPIPFPRFPWFRRNFPI
PIPESAPTTPLPSEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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