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Report for CCDS35130.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35130.2 Public Homo sapiens 9 OR1L6 24 110 108 CCDS HistoryNCBI Gene:392390Re-query CCDS DB by CCDS ID:35130.2Re-query CCDS DB by GeneID:392390See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35130.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available protein data. This olfactory receptor (OR) gene lacks transcript support, possibly because OR genes are expressed in only a very small fraction of olfactory neurons, and thus, transcript evidence may be difficult to detect for all functional genes. The updated representation is consistent with that of The Human Olfactory Data Explorer (HORDE) database, entry #42-827.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35130.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304720.3 ENSP00000304235.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304720.3Link to Ensembl Protein Viewer:ENSP00000304235.2Re-query CCDS DB by Nucleotide ID:ENST00000304720Re-query CCDS DB by Protein ID:ENSP00000304235
Original member Current member NCBI NM_001004453.3 NP_001004453.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004453.3Link to Protein Sequence:NP_001004453.2Re-query CCDS DB by Nucleotide ID:NM_001004453Re-query CCDS DB by Protein ID:NP_001004453Link to BLAST:NP_001004453.2

Chromosomal Locations for CCDS 35130.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122749848 122750783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAGATAAAGAACTACAGCAGCAGCACCTCAGGCTTCATCCTCCTGGGCCTCTCTTCCAACCCTCAGC
TGCAGAAACCTCTCTTTGCCATCTTCCTCATCATGTACCTGCTCGCTGCGGTGGGGAATGTGCTCATCAT
CCCGGCCATCTACTCTGACCCCAGGCTCCACACCCCTATGTACTTTTTTCTCAGCAACTTGTCTTTCATG
GATATCTGCTTCACAACAGTCATAGTGCCTAAGATGCTGGTGAATTTTCTATCAGAGACAAAGGTTATCT
CCTATGTGGGCTGCCTGGCCCAGATGTACTTCTTTATGGCATTTGGGAACACTGACAGCTACCTGCTGGC
CTCTATGGCCATCGACCGGCTGGTGGCCATCTGCAACCCCTTACACTATGATGTGGTTATGAAACCACGG
CATTGCCTGCTCATGCTATTGGGTTCTTGCAGCATCTCCCACCTACATTCCCTGTTCCGCGTGCTACTTA
TGTCTCGCTTGTCTTTCTGTGCCTCTCACATCATTAAGCACTTTTTCTGTGACACCCAGCCTGTGCTAAA
GCTCTCCTGCTCTGACACATCCTCCAGCCAGATGGTGGTGATGACTGAGACCTTAGCTGTCATTGTGACC
CCCTTCCTGTGTATCATCTTCTCCTACCTGCGAATCATGGTCACTGTGCTCAGAATCCCCTCTGCAGCCG
GGAAGTGGAAGGCCTTCTCTACCTGTGGCTCCCACCTCACTGCAGTAGCCCTTTTCTATGGGAGTATTAT
TTATGTCTATTTTAGGCCCCTGTCCATGTACTCAGTGGTTAGGGACCGGGTAGCCACAGTTATGTACACA
GTAGTGACACCCATGCTGAACCCTTTCATCTACAGCCTGAGGAACAAAGATATGAAGAGGGGTTTGAAGA
AATTACAGGACAGAATTTACCGGTAA

Translation (311 aa):
MEIKNYSSSTSGFILLGLSSNPQLQKPLFAIFLIMYLLAAVGNVLIIPAIYSDPRLHTPMYFFLSNLSFM
DICFTTVIVPKMLVNFLSETKVISYVGCLAQMYFFMAFGNTDSYLLASMAIDRLVAICNPLHYDVVMKPR
HCLLMLLGSCSISHLHSLFRVLLMSRLSFCASHIIKHFFCDTQPVLKLSCSDTSSSQMVVMTETLAVIVT
PFLCIIFSYLRIMVTVLRIPSAAGKWKAFSTCGSHLTAVALFYGSIIYVYFRPLSMYSVVRDRVATVMYT
VVTPMLNPFIYSLRNKDMKRGLKKLQDRIYR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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