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Report for CCDS3508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3508.1 Public Homo sapiens 4 SPINK2 24 110 108 CCDS HistoryNCBI Gene:6691Re-query CCDS DB by CCDS ID:3508.1Re-query CCDS DB by GeneID:6691See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248701.8 ENSP00000248701.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248701.8Link to Ensembl Protein Viewer:ENSP00000248701.4Re-query CCDS DB by Nucleotide ID:ENST00000248701Re-query CCDS DB by Protein ID:ENSP00000248701
Original member Current member NCBI NM_021114.4 NP_066937.1 Accepted alive Link to Nucleotide Sequence:NM_021114.4Link to Protein Sequence:NP_066937.1Re-query CCDS DB by Nucleotide ID:NM_021114Re-query CCDS DB by Protein ID:NP_066937Link to BLAST:NP_066937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066937.1 84 P20155 84 100% 0 0

Chromosomal Locations for CCDS 3508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56810139 56810184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56811685 56811794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56820536 56820579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56821608 56821662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGGCGCTGTCGGTGCTGCGCTTGGCGCTGCTGCTCCTGGCAGTTACCTTCGCAGCCTCTCTGATCCCTC
AATTTGGTCTGTTTTCAAAATATAGAACGCCAAACTGCTCTCAGTATAGATTACCAGGATGTCCCAGACA
CTTTAACCCTGTGTGTGGCAGTGACATGTCCACTTATGCCAATGAATGTACTCTGTGCATGAAAATCAGG
GAAGGTGGTCATAATATTAAAATCATTCGAAATGGACCCTGCTGA

Translation (84 aa):
MALSVLRLALLLLAVTFAASLIPQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIR
EGGHNIKIIRNGPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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