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Report for CCDS34972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34972.1 Public Homo sapiens 8 ZNF250 24 110 108 CCDS HistoryNCBI Gene:58500Re-query CCDS DB by CCDS ID:34972.1Re-query CCDS DB by GeneID:58500See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292579.11 ENSP00000292579.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292579.11Link to Ensembl Protein Viewer:ENSP00000292579.7Re-query CCDS DB by Nucleotide ID:ENST00000292579Re-query CCDS DB by Protein ID:ENSP00000292579
Original member Current member NCBI NM_001363098.2 NP_001350027.1 Accepted alive Link to Nucleotide Sequence:NM_001363098.2Link to Protein Sequence:NP_001350027.1Re-query CCDS DB by Nucleotide ID:NM_001363098Re-query CCDS DB by Protein ID:NP_001350027Link to BLAST:NP_001350027.1
Original member Current member NCBI NM_001363099.2 NP_001350028.1 Accepted alive Link to Nucleotide Sequence:NM_001363099.2Link to Protein Sequence:NP_001350028.1Re-query CCDS DB by Nucleotide ID:NM_001363099Re-query CCDS DB by Protein ID:NP_001350028Link to BLAST:NP_001350028.1
Original member Current member NCBI NM_021061.5 NP_066405.1 Accepted alive Link to Nucleotide Sequence:NM_021061.5Link to Protein Sequence:NP_066405.1Re-query CCDS DB by Nucleotide ID:NM_021061Re-query CCDS DB by Protein ID:NP_066405Link to BLAST:NP_066405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350027.1 560 P15622-1 560 100% 0 0
NP_001350028.1 560 P15622-1 560 100% 0 0
NP_066405.1 560 P15622-1 560 100% 0 0

Chromosomal Locations for CCDS 34972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144881515 144882836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144886840 144886902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144889581 144889694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144889933 144890074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144890308 144890349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCAGCAGCCAGACTCCTGCCAGTGCCGGCAGGACCCCAGCCCCTGTCGTTCCAGGCCAAGCTGACCT
TCGAGGATGTGGCTGTGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGTCTCTA
CAGAAATGTGATGATGGAAACCTATGGGAATGTAGTCTCATTGGGACTTCCAGGATCCAAGCCTGACATA
ATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCC
TGTGGAGTGACTACTCAGACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATC
TTGTCCATGGGAATGTGAAACCAAGGGAGAGAGTCAAAATACAGACTTGAGTCCGAAGCCATTAATTTCA
GAGCAAACAGTGATTCTGGGGAAAACACCCTTGGGGAGGATTGATCAAGAAAATAATGAAACAAAGCAAA
GCTTCTGTCTGAGTCCAAACTCTGTTGACCACCGTGAAGTTCAGGTCTTAAGCCAAAGCATGCCACTCAC
TCCGCACCAGGCAGTGCCTAGTGGAGAGAGGCCCTACATGTGTGTTGAGTGTGGGAAGTGCTTTGGCCGG
AGTTCCCACCTCCTTCAGCATCAGCGTATCCACACTGGAGAGAAGCCCTATGTGTGCAGTGTATGTGGGA
AGGCCTTCAGCCAGAGCTCAGTCCTTAGTAAACACAGGAGAATTCACACAGGTGAGAAGCCCTATGAGTG
TAATGAGTGTGGAAAAGCCTTTAGAGTGAGCTCAGATCTTGCTCAGCATCACAAGATACATACAGGAGAG
AAGCCTCACGAATGTCTTGAGTGTCGGAAAGCCTTCACTCAACTCTCACATCTCATTCAGCACCAGCGGA
TCCACACGGGAGAAAGGCCATATGTGTGTCCGTTGTGTGGGAAAGCCTTCAACCATAGCACTGTTCTGCG
GAGCCACCAGAGGGTACACACTGGGGAGAAGCCTCACAGGTGCAATGAGTGTGGGAAAACCTTCAGTGTG
AAGAGGACACTGCTGCAGCACCAGAGGATCCACACCGGGGAGAAGCCCTACACGTGCAGCGAGTGTGGGA
AGGCCTTCAGCGACCGCTCAGTCCTCATTCAGCACCACAACGTGCACACCGGGGAGAAGCCCTATGAGTG
CAGTGAGTGTGGGAAGACCTTCAGCCACCGCTCCACACTGATGAATCACGAGCGGATCCACACCGAGGAA
AAGCCCTATGCATGCTACGAATGTGGGAAGGCCTTCGTTCAGCACTCACACCTGATCCAGCACCAGAGAG
TCCACACTGGGGAGAAGCCCTATGTGTGTGGTGAATGTGGGCACGCCTTCAGTGCACGCCGGTCTCTGAT
CCAGCATGAGAGAATCCACACAGGTGAAAAGCCCTTCCAGTGCACAGAATGTGGCAAAGCCTTCAGCCTG
AAAGCAACTCTGATTGTGCACCTGAGGACCCACACGGGCGAGAAGCCATATGAGTGCAATAGCTGCGGGA
AGGCCTTCAGCCAGTACTCAGTGCTCATCCAGCACCAGCGGATCCACACAGGCGAGAAGCCCTATGAGTG
CGGGGAGTGTGGGCGTGCCTTCAACCAGCATGGCCACCTAATCCAGCACCAGAAAGTGCACAGAAAGTTG
TGA

Translation (560 aa):
MAAARLLPVPAGPQPLSFQAKLTFEDVAVLLSQDEWDRLCPAQRGLYRNVMMETYGNVVSLGLPGSKPDI
ISQLERGEDPWVLDRKGAKKSQGLWSDYSDNLKYDHTTACTQQDSLSCPWECETKGESQNTDLSPKPLIS
EQTVILGKTPLGRIDQENNETKQSFCLSPNSVDHREVQVLSQSMPLTPHQAVPSGERPYMCVECGKCFGR
SSHLLQHQRIHTGEKPYVCSVCGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGE
KPHECLECRKAFTQLSHLIQHQRIHTGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSV
KRTLLQHQRIHTGEKPYTCSECGKAFSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIHTEE
KPYACYECGKAFVQHSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQCTECGKAFSL
KATLIVHLRTHTGEKPYECNSCGKAFSQYSVLIQHQRIHTGEKPYECGECGRAFNQHGHLIQHQKVHRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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