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Report for CCDS348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
348.1 Public Homo sapiens 1 PTP4A2 24 110 108 CCDS HistoryNCBI Gene:8073Re-query CCDS DB by CCDS ID:348.1Re-query CCDS DB by GeneID:8073See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000602725.5 ENSP00000473259.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602725.5Link to Ensembl Protein Viewer:ENSP00000473259.1Re-query CCDS DB by Nucleotide ID:ENST00000602725Re-query CCDS DB by Protein ID:ENSP00000473259
Original member Current member EBI ENST00000647444.2 ENSP00000493688.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647444.2Link to Ensembl Protein Viewer:ENSP00000493688.1Re-query CCDS DB by Nucleotide ID:ENST00000647444Re-query CCDS DB by Protein ID:ENSP00000493688
Original member Current member EBI ENST00000649841.1 ENSP00000497092.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649841.1Link to Ensembl Protein Viewer:ENSP00000497092.1Re-query CCDS DB by Nucleotide ID:ENST00000649841Re-query CCDS DB by Protein ID:ENSP00000497092
Original member Current member NCBI NM_001369859.1 NP_001356788.1 Accepted alive Link to Nucleotide Sequence:NM_001369859.1Link to Protein Sequence:NP_001356788.1Re-query CCDS DB by Nucleotide ID:NM_001369859Re-query CCDS DB by Protein ID:NP_001356788Link to BLAST:NP_001356788.1
Original member Current member NCBI NM_001369860.1 NP_001356789.1 Accepted alive Link to Nucleotide Sequence:NM_001369860.1Link to Protein Sequence:NP_001356789.1Re-query CCDS DB by Nucleotide ID:NM_001369860Re-query CCDS DB by Protein ID:NP_001356789Link to BLAST:NP_001356789.1
Original member Current member NCBI NM_080391.4 NP_536316.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080391.4Link to Protein Sequence:NP_536316.1Re-query CCDS DB by Nucleotide ID:NM_080391Re-query CCDS DB by Protein ID:NP_536316Link to BLAST:NP_536316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356788.1 167 Q12974-1 167 100% 0 0
NP_001356789.1 167 Q12974-1 167 100% 0 0
NP_536316.1 167 Q12974-1 167 100% 0 0

Chromosomal Locations for CCDS 348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31908852 31908960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31910038 31910112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31911696 31911826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31915895 31915987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31918970 31919065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCA
ATGCTACTCTCAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGA
TGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCATTTGATGATGGA
GCTCCACCCCCTAATCAGATAGTAGATGATTGGTTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAG
GTTGCTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAGGGCACCTGTGCTGGTTGCACTTGCTTTGAT
TGAATGTGGAATGAAGTACGAAGATGCAGTTCAGTTTATAAGACAAAAAAGAAGGGGAGCGTTCAATTCC
AAACAGCTGCTTTATTTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACCAATGGGCATT
GCTGTGTTCAGTAG

Translation (167 aa):
MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDG
APPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNS
KQLLYLEKYRPKMRLRFRDTNGHCCVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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