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Report for CCDS34721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34721.1 Public Homo sapiens 7 LRRC17 24 110 108 CCDS HistoryNCBI Gene:10234Re-query CCDS DB by CCDS ID:34721.1Re-query CCDS DB by GeneID:10234See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34721.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339431.9 ENSP00000344242.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339431.9Link to Ensembl Protein Viewer:ENSP00000344242.4Re-query CCDS DB by Nucleotide ID:ENST00000339431Re-query CCDS DB by Protein ID:ENSP00000344242
Original member Current member NCBI NM_001031692.3 NP_001026862.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031692.3Link to Protein Sequence:NP_001026862.1Re-query CCDS DB by Nucleotide ID:NM_001031692Re-query CCDS DB by Protein ID:NP_001026862Link to BLAST:NP_001026862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026862.1 441 Q8N6Y2-1 441 100% 0 0

Chromosomal Locations for CCDS 34721.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102933914 102934685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102939430 102939585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102944210 102944607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGCGTGTGGTTACCATTGTAATCTTGCTCTGCTTTTGCAAAGCGGCTGAGCTGCGCAAAGCAAGCCCAG
GCAGTGTGAGAAGCCGAGTGAATCATGGCCGGGCGGGTGGAGGCCGGAGAGGCTCCAACCCGGTCAAACG
CTACGCACCAGGCCTCCCGTGTGACGTGTACACATATCTCCATGAGAAATACTTAGATTGTCAAGAAAGA
AAATTAGTTTATGTGCTGCCTGGTTGGCCTCAGGATTTGCTGCACATGCTGCTAGCAAGAAACAAGATCC
GCACATTGAAGAACAACATGTTTTCCAAGTTTAAAAAGCTGAAAAGCCTGGATCTGCAGCAGAATGAGAT
CTCTAAAATTGAGAGTGAGGCGTTCTTTGGTTTAAACAAACTCACCACCCTCTTACTGCAGCACAACCAG
ATCAAAGTCTTGACGGAGGAAGTGTTCATTTACACACCTCTCTTGAGCTACCTGCGTCTTTATGACAACC
CCTGGCACTGTACTTGTGAGATAGAAACGCTTATTTCAATGTTGCAGATTCCCAGGAACCGGAATTTGGG
GAACTACGCCAAGTGTGAAAGTCCACAAGAACAAAAAAATAAAAAACTGCGGCAGATAAAATCTGAACAG
TTGTGTAATGAAGAAGAAAAGGAACAATTGGACCCGAAACCCCAAGTGTCAGGGAGACCCCCAGTCATCA
AGCCTGAGGTGGACTCAACTTTTTGCCACAATTATGTGTTTCCCATACAAACACTGGACTGCAAAAGGAA
AGAGTTGAAAAAAGTGCCAAACAACATCCCTCCAGATATTGTTAAACTTGACTTGTCATACAATAAAATC
AACCAACTTCGACCCAAGGAATTTGAAGATGTTCATGAGCTGAAGAAATTAAACCTCAGCAGCAATGGCA
TTGAATTCATCGATCCTGCCGCTTTTTTAGGGCTCACACATTTAGAAGAATTAGATTTATCAAACAACAG
TCTGCAAAACTTTGACTATGGCGTATTAGAAGACTTGTATTTTTTGAAACTCTTGTGGCTCAGAGATAAC
CCTTGGAGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAAGCACCACTACAATGTCCATTTTA
ATGGCCTGGAATGCAAAACGCCTGAAGAATACAAAGGATGGTCTGTGGGAAAATATATTAGAAGTTACTA
TGAAGAATGCCCCAAAGACAAGTTACCAGCATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA
TGGGAAAAAAAACATAGAGATCACACCGCAAAGAAGCAAAGCGTAATAATTACTATAGTAGGATAA

Translation (441 aa):
MRVVTIVILLCFCKAAELRKASPGSVRSRVNHGRAGGGRRGSNPVKRYAPGLPCDVYTYLHEKYLDCQER
KLVYVLPGWPQDLLHMLLARNKIRTLKNNMFSKFKKLKSLDLQQNEISKIESEAFFGLNKLTTLLLQHNQ
IKVLTEEVFIYTPLLSYLRLYDNPWHCTCEIETLISMLQIPRNRNLGNYAKCESPQEQKNKKLRQIKSEQ
LCNEEEKEQLDPKPQVSGRPPVIKPEVDSTFCHNYVFPIQTLDCKRKELKKVPNNIPPDIVKLDLSYNKI
NQLRPKEFEDVHELKKLNLSSNGIEFIDPAAFLGLTHLEELDLSNNSLQNFDYGVLEDLYFLKLLWLRDN
PWRCDYNIHYLYYWLKHHYNVHFNGLECKTPEEYKGWSVGKYIRSYYEECPKDKLPAYPESFDQDTEDDE
WEKKHRDHTAKKQSVIITIVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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