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Report for CCDS34706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34706.1 Public Homo sapiens 7 LRCH4 24 110 108 CCDS HistoryNCBI Gene:4034Re-query CCDS DB by CCDS ID:34706.1Re-query CCDS DB by GeneID:4034See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310300.11 ENSP00000309689.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310300.11Link to Ensembl Protein Viewer:ENSP00000309689.6Re-query CCDS DB by Nucleotide ID:ENST00000310300Re-query CCDS DB by Protein ID:ENSP00000309689
Original member Current member NCBI NM_002319.5 NP_002310.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002319.5Link to Protein Sequence:NP_002310.2Re-query CCDS DB by Nucleotide ID:NM_002319Re-query CCDS DB by Protein ID:NP_002310Link to BLAST:NP_002310.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002310.2 683 O75427 683 100% 0 0

Chromosomal Locations for CCDS 34706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100575107 100575304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100575705 100575782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100575871 100576008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100576238 100576323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100576694 100576777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100576902 100577005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100577086 100577154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100577273 100577389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100577497 100577558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100577664 100577740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100577822 100577912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100578159 100578258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100578399 100578511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100578650 100578786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100581777 100581882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100582041 100582167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100582315 100582459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100585881 100586100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGCGGCGGCCGTAGCGGCTCCACTCGCCGCCGGGGGTGAGGAGGCGGCAGCCACGACCTCCGTGCCCG
GGTCTCCAGGTCTGCCGGGGAGACGCAGTGCAGAGCGGGCCCTAGAGGAGGCCGTGGCCACCGGGACCCT
GAACCTGTCTAACCGGCGCTTGAAGCACTTCCCCCGGGGCGCGGCCCGTAGCTACGACCTGTCAGACATC
ACCCAGGCTGACCTGTCCCGGAACCGGTTTCCCGAGGTGCCCGAGGCGGCGTGCCAGCTGGTGTCCCTGG
AGGGCCTGAGCCTCTACCACAATTGCCTGAGATGCCTGAACCCAGCCTTGGGGAATCTCACAGCCCTCAC
CTACCTCAACCTCAGCCGAAACCAGCTGTCGCTGCTGCCACCCTACATCTGCCAGCTGCCCCTGAGGGTC
CTCATCGTCAGCAACAACAAGCTGGGAGCCCTGCCCCCTGACATCGGCACCCTGGGAAGCCTGCGACAGC
TTGACGTGAGCAGCAACGAGCTCCAATCCCTGCCCTCGGAACTGTGTGGCCTCTCTTCCCTGCGGGACCT
CAATGTCCGGAGGAACCAGCTCAGTACGCTGCCCGAAGAGCTGGGGGACCTCCCTCTGGTCCGCCTGGAT
TTCTCCTGTAACCGCGTCTCCCGAATCCCAGTCTCCTTCTGCCGCCTGAGGCACCTGCAGGTCATTCTGC
TGGACAGCAACCCTCTGCAGAGTCCACCTGCCCAGGTCTGCCTGAAGGGGAAACTTCACATCTTCAAGTA
TTTGTCCACAGAGGCCGGGCAGCGTGGGTCGGCCCTGGGGGACCTGGCCCCTTCTCGGCCCCCGAGTTTC
AGTCCCTGCCCTGCAGAGGATCTATTTCCGGGACATCGGTACGATGGTGGGCTGGACTCAGGCTTCCACA
GCGTTGATAGTGGCAGCAAGAGGTGGTCTGGAAATGAGTCAACAGATGAATTTTCAGAGCTGTCATTCCG
GATCTCAGAGCTGGCCCGGGAGCCCCGGGGACCCAGAGAACGCAAGGAGGATGGCTCAGCGGACGGAGAC
CCTGTGCAGATTGACTTCATCGACAGCCATGTCCCCGGGGAGGATGAAGAGCGAGGCACTGTGGAGGAGC
AGCGACCACCCGAATTAAGCCCTGGGGCAGGGGACAGGGAGAGGGCACCAAGCAGCAGGCGGGAGGAGCC
GGCAGGGGAGGAGCGGCGGCGCCCGGACACCTTGCAGCTGTGGCAGGAGCGGGAACGGCGGCAGCAGCAG
CAGAGCGGGGCGTGGGGGGCCCCGAGGAAGGATAGCCTCTTGAAGCCAGGGCTCAGGGCTGTTGTGGGAG
GGGCCGCCGCCGTGTCCACTCAAGCCATGCACAACGGCTCGCCTAAGTCCAGTGCCTCCCAAGCAGGGGC
TGCAGCGGGGCAGGGAGCCCCCGCCCCTGCCCCTGCCTCCCAAGAGCCCCTTCCCATAGCTGGACCAGCG
ACAGCACCTGCTCCACGGCCACTTGGCTCCATTCAGAGACCAAACAGCTTCCTCTTCCGTTCCTCCTCTC
AGAGTGGCTCAGGCCCTTCCTCACCAGACTCTGTCCTGAGACCTCGGCGGTACCCCCAGGTTCCAGATGA
GAAGGACTTAATGACTCAGCTGCGCCAGGTCCTTGAGTCCCGGCTGCAGCGGCCCCTGCCTGAGGACCTG
GCCGAGGCTCTGGCCAGTGGGGTCATCCTGTGCCAGCTGGCCAACCAGCTACGGCCGCGCTCCGTGCCCT
TCATCCATGTGCCCTCCCCTGCTGTGCCAAAACTCAGTGCCCTCAAGGCTCGGAAGAATGTGGAGAGTTT
TCTAGAAGCCTGTCGAAAAATGGGGGTGCCTGAGGCTGACCTGTGCTCGCCCTCGGATCTCCTCCAGGGC
ACTGCCCGGGGGCTGCGGACCGCGCTGGAGGCCGTGAAGCGGGTGGGGGGCAAGGCCCTACCGCCCCTCT
GGCCCCCCTCTGGTCTGGGCGGCTTCGTCGTCTTCTACGTGGTCCTCATGCTGCTGCTCTATGTCACCTA
CACTCGGCTCCTGGGTTCCTAG

Translation (683 aa):
MAAAVAAPLAAGGEEAAATTSVPGSPGLPGRRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDI
TQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSLLPPYICQLPLRV
LIVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRNQLSTLPEELGDLPLVRLD
FSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGQRGSALGDLAPSRPPSF
SPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERKEDGSADGD
PVQIDFIDSHVPGEDEERGTVEEQRPPELSPGAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQ
QSGAWGAPRKDSLLKPGLRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPASQEPLPIAGPA
TAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDLMTQLRQVLESRLQRPLPEDL
AEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKARKNVESFLEACRKMGVPEADLCSPSDLLQG
TARGLRTALEAVKRVGGKALPPLWPPSGLGGFVVFYVVLMLLLYVTYTRLLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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