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Report for CCDS34437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34437.1 Public Homo sapiens 6 BRPF3 24 110 108 CCDS HistoryNCBI Gene:27154Re-query CCDS DB by CCDS ID:34437.1Re-query CCDS DB by GeneID:27154See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34437.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357641.10 ENSP00000350267.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357641.10Link to Ensembl Protein Viewer:ENSP00000350267.6Re-query CCDS DB by Nucleotide ID:ENST00000357641Re-query CCDS DB by Protein ID:ENSP00000350267
Original member Current member NCBI NM_015695.3 NP_056510.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015695.3Link to Protein Sequence:NP_056510.2Re-query CCDS DB by Nucleotide ID:NM_015695Re-query CCDS DB by Protein ID:NP_056510Link to BLAST:NP_056510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056510.2 1205 Q9ULD4-1 1205 100% 0 0

Chromosomal Locations for CCDS 34437.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36200323 36201770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36204658 36204814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36207313 36207444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36209787 36209915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36210216 36210528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36211258 36211560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36213880 36214386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36217917 36218010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36222168 36222265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36225267 36225364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36228902 36229056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36230426 36230609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3618 nt):
ATGAGGAAGCCTCGTCGGAAGTCCCGGCAGAATGCCGAGGGCCGGCGTTCCCCGTCCCCCTACAGTCTCA
AGTGCTCACCCACCCGGGAGACCCTGACATATGCCCAGGCCCAGCGGATTGTCGAGGTAGACATTGATGG
ACGCCTGCATCGTATCAGCATCTATGACCCACTCAAAATCATTACTGAAGATGAGCTAACTGCCCAGGAT
ATCACCGAATGCAATAGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGGCAAGTCCAAGAAACCCT
CATCCAAGGGCAAAAAGAAGGAATCCTGCTCCAAGCATGCATCTGGTACTTCCTTCCACCTCCCACAGCC
CAGCTTCCGTATGGTGGACTCAGGCATCCAGCCAGAAGCACCCCCGCTGCCTGCTGCCTACTACCGCTAC
ATTGAGAAGCCACCTGAAGACCTGGATGCAGAGGTAGAGTATGACATGGATGAGGAGGACCTTGCCTGGC
TGGACATGGTGAATGAAAAACGGCGAGTAGATGGGCACAGTTTGGTGTCTGCAGATACCTTTGAGCTGCT
GGTAGACCGGCTTGAGAAAGAGTCATACTTGGAGAGTCGCAGCAGTGGGGCCCAACAGTCACTCATCGAT
GAAGACGCTTTCTGCTGTGTGTGCCTGGATGATGAATGTCACAATAGCAATGTTATTCTCTTCTGTGACA
TCTGCAACCTGGCTGTACACCAGGAGTGCTATGGCGTCCCATACATCCCTGAGGGCCAGTGGCTATGCCG
CTGCTGCCTGCAGTCTCCCTCCCGGCCTGTGGATTGCATCCTTTGCCCCAATAAGGGTGGCGCCTTCAAA
CAGACCAGTGATGGGCACTGGGCCCATGTGGTGTGTGCCATCTGGATCCCTGAAGTCTGCTTTGCTAACA
CCGTGTTCTTGGAACCTATTGAGGGCATTGACAATATCCCGCCTGCCCGCTGGAAACTAACCTGCTATAT
CTGCAAGCAGAAAGGGCTAGGTGCAGCCATCCAGTGCCATAAGGTGAACTGCTACACAGCATTCCATGTG
ACATGTGCACAGCGGGCTGGGCTCTTCATGAAGATTGAGCCCATGCGCGAAACCAGCCTCAATGGCACCA
TCTTTACAGTGCGCAAGACTGCCTACTGTGAGGCCCACTCGCCACCAGGTGCGGCCACTGCTAGGAGGAA
GGGCGACTCCCCTAGAAGCATCAGTGAGACTGGCGATGAGGAAGGGCTGAAGGAGGGTGATGGAGAGGAG
GAAGAAGAGGAAGAGGTGGAGGAAGAAGAGCAGGAAGCTCAAGGCGGGGTGAGTGGCTCCCTCAAGGGAG
TGCCCAAGAAAAGCAAGATGAGTTTGAAGCAGAAGATCAAGAAGGAGCCAGAGGAAGCAGGCCAAGACAC
ACCCTCCACTCTCCCCATGCTTGCTGTCCCACAGATACCCTCTTACAGGTTGAACAAGATCTGTAGTGGT
CTCTCCTTTCAGAGGAAAAACCAGTTTATGCAGCGGCTTCACAATTATTGGCTGTTGAAGCGGCAGGCAC
GGAATGGTGTCCCTCTTATCCGGCGCTTGCACTCCCATCTGCAGTCCCAAAGAAACGCTGAGCAGCGAGA
GCAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGTATTGGCAGAAGCTCCGGCATGACTTGGAG
CGGGCGCGGCTGCTGATTGAGCTGATTCGGAAGAGAGAGAAGCTCAAACGAGAGCAGGTCAAAGTCCAGC
AGGCTGCCATGGAGCTGGAGCTGATGCCATTCAATGTTCTGTTGAGGACAACACTGGACCTGCTGCAGGA
GAAGGATCCTGCACACATCTTCGCAGAACCAGTCAACTTGAGTGAGGTTCCAGATTACCTGGAATTCATA
TCCAAGCCAATGGATTTTTCTACTATGAGGCGGAAGCTGGAGTCCCACCTGTACCGCACCTTGGAGGAGT
TTGAGGAGGACTTTAACCTTATAGTTACCAACTGCATGAAGTATAATGCTAAAGACACAATTTTCCACCG
AGCAGCTGTCCGCCTGCGGGACCTGGGAGGGGCCATCCTACGGCACGCCCGGCGGCAGGCAGAGAACATC
GGCTATGACCCCGAGAGGGGCACTCACCTGCCCGAGTCACCCAAATTGGAAGACTTTTACCGCTTCTCCT
GGGAAGACGTGGACAACATCCTCATCCCAGAGAACCGGGCCCATTTGTCCCCAGAGGTGCAGCTGAAGGA
GCTGCTGGAGAAACTGGACCTGGTGAGCGCCATGCGGTCCAGTGGGGCCCGCACCCGTCGTGTCCGCCTG
CTACGCCGGGAGATCAATGCCCTTCGGCAGAAGCTGGCACAGCCACCACCACCACAGCCACCATCACTCA
ACAAGACAGTATCCAATGGGGAGCTGCCAGCAGGGCCCCAGGGGGATGCAGCTGTGCTGGAGCAGGCCTT
GCAGGAGGAGCCAGAAGACGATGGGGACAGAGATGACTCCAAACTGCCTCCTCCGCCAACCCTGGAGCCC
ACTGGGCCTGCACCTTCCTTGTCTGAGCAAGAATCCCCCCCGGAGCCCCCTACTCTGAAACCCATTAATG
ATAGCAAACCTCCAAGCAGGTTCCTAAAGCCCAGAAAGGTGGAAGAAGATGAGCTCTTGGAAAAATCACC
ACTGCAGCTAGGGAATGAGCCTTTGCAACGCTTGCTCAGTGACAATGGCATCAACAGACTATCCCTCATG
GCCCCTGACACCCCGGCCGGTACCCCACTTAGTGGTGTGGGTCGCCGCACATCAGTCCTCTTCAAGAAGG
CCAAGAATGGGGTTAAGCTACAGAGAAGCCCAGACAGGGTCCTGGAGAATGGCGAGGACCATGGTGTGGC
AGGCTCTCCTGCCTCTCCAGCCAGCATCGAGGAAGAGCGCCACTCCCGGAAGCGGCCAAGGAGCAGGAGC
TGTAGTGAGAGCGAAGGGGAGAGGTCCCCCCAGCAGGAGGAAGAGACAGGCATGACCAACGGCTTTGGAA
AACACACCGAAAGCGGGTCTGACTCTGAATGTAGTTTGGGTCTCAGTGGTGGACTGGCATTTGAAGCTTG
CAGTGGTCTGACGCCCCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGAGTGCCCTTCCTGGAAGGT
GTGAACGGAGACTCTGACTACAATGGCTCAGGCAGAAGCCTCCTGCTGCCCTTTGAAGACCGCGGAGACC
TGGAGCCCTTGGAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCTGCCTTGATCATCGATCC
CAAGATGCCCCGGGAGGGCCTCCTGCACAATGGCGTTCCCATCCCTGTCCCCCCGCTGGACGTGCTGAAG
CTGGGAGAGCAGAAACAGGCAGAGGCTGGAGAGAAGCTCTTCCTTGTCCTCTTCTTTGACAACAAGCGCA
CCTGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCTTGGGTGTGGAAGACACCGTGGACAAGCTCAAGAT
GCTGGAAGGCCGCAAGACCAGCATCCGCAAGTCAGTGCAGGTGGCCTATGACCGTGCGATGATCCACCTG
AGCAGAGTCCGGGGGCCCCACTCCTTCGTCACTTCCAGCTACCTGTAA

Translation (1205 aa):
MRKPRRKSRQNAEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDIDGRLHRISIYDPLKIITEDELTAQD
ITECNSNKENSEQPQFPGKSKKPSSKGKKKESCSKHASGTSFHLPQPSFRMVDSGIQPEAPPLPAAYYRY
IEKPPEDLDAEVEYDMDEEDLAWLDMVNEKRRVDGHSLVSADTFELLVDRLEKESYLESRSSGAQQSLID
EDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFK
QTSDGHWAHVVCAIWIPEVCFANTVFLEPIEGIDNIPPARWKLTCYICKQKGLGAAIQCHKVNCYTAFHV
TCAQRAGLFMKIEPMRETSLNGTIFTVRKTAYCEAHSPPGAATARRKGDSPRSISETGDEEGLKEGDGEE
EEEEEVEEEEQEAQGGVSGSLKGVPKKSKMSLKQKIKKEPEEAGQDTPSTLPMLAVPQIPSYRLNKICSG
LSFQRKNQFMQRLHNYWLLKRQARNGVPLIRRLHSHLQSQRNAEQREQDEKTSAVKEELKYWQKLRHDLE
RARLLIELIRKREKLKREQVKVQQAAMELELMPFNVLLRTTLDLLQEKDPAHIFAEPVNLSEVPDYLEFI
SKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENI
GYDPERGTHLPESPKLEDFYRFSWEDVDNILIPENRAHLSPEVQLKELLEKLDLVSAMRSSGARTRRVRL
LRREINALRQKLAQPPPPQPPSLNKTVSNGELPAGPQGDAAVLEQALQEEPEDDGDRDDSKLPPPPTLEP
TGPAPSLSEQESPPEPPTLKPINDSKPPSRFLKPRKVEEDELLEKSPLQLGNEPLQRLLSDNGINRLSLM
APDTPAGTPLSGVGRRTSVLFKKAKNGVKLQRSPDRVLENGEDHGVAGSPASPASIEEERHSRKRPRSRS
CSESEGERSPQQEEETGMTNGFGKHTESGSDSECSLGLSGGLAFEACSGLTPPKRSRGKPALSRVPFLEG
VNGDSDYNGSGRSLLLPFEDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLK
LGEQKQAEAGEKLFLVLFFDNKRTWQWLPRDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHL
SRVRGPHSFVTSSYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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