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Report for CCDS34389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34389.1 Public Homo sapiens 6 CDSN 24 110 108 CCDS HistoryNCBI Gene:1041Re-query CCDS DB by CCDS ID:34389.1Re-query CCDS DB by GeneID:1041See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376288.3 ENSP00000365465.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376288.3Link to Ensembl Protein Viewer:ENSP00000365465.2Re-query CCDS DB by Nucleotide ID:ENST00000376288Re-query CCDS DB by Protein ID:ENSP00000365465
Original member Current member NCBI NM_001264.5 NP_001255.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001264.5Link to Protein Sequence:NP_001255.4Re-query CCDS DB by Nucleotide ID:NM_001264Re-query CCDS DB by Protein ID:NP_001255Link to BLAST:NP_001255.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001255.4 529 Q15517 529 100% 0 0

Chromosomal Locations for CCDS 34389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31116025 31117529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31120335 31120419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGGCTCGTCTCGGGCACCCTGGATGGGGCGTGTGGGTGGGCACGGGATGATGGCACTGCTGCTGGCTG
GT
CTCCTCCTGCCAGGGACCTTGGCTAAGAGCATTGGCACCTTCTCAGACCCTTGTAAGGACCCCACGCG
T
ATCACCTCCCCTAACGACCCCTGCCTCACTGGGAAGGGTGACTCCAGCGGTTTCAGTAGCTACAGTGGC
TCC
AGCAGTTCTGGCAGCTCCATTTCCAGTGCCAGAAGCTCTGGTGGTGGCTCCAGTGGTAGCTCCAGCG
GA
TCCAGCATTGCCCAGGGTGGTTCTGCAGGATCTTTTAAGCCAGGAACGGGGTATTCCCAGGTCAGCTA
C
TCCTCCGGATCTGGCTCTAGTCTACAAGGTGCATCCGGTTCCTCCCAGCTGGGGAGCAGCAGCTCTCAC
TCG
GGAAACAGCGGCTCTCACTCGGGAAGCAGCAGCTCTCATTCGAGCAGCAGCAGCAGCTTTCAGTTCA
GC
AGCAGCAGCTTCCAAGTAGGGAATGGCTCTGCTCTGCCAACCAATGACAACTCTTACCGCGGAATACT
A
AACCCTTCCCAGCCTGGACAAAGCTCTTCCTCTTCCCAGACCTTTGGGGTATCCAGCAGTGGCCAAAGC
GTC
AGCTCCAACCAGCGTCCCTGTAGTTCGGACATCCCCGACTCTCCCTGCAGTGGAGGGCCCATCGTCT
CG
CACTCCGGCCCCTACATCCCCAGCTCCCACTCTGTGTCAGGGGGTCAGAGGCCTGTGGTGGTGGTGGT
G
GACCAGCACGGTTCTGGTGCCCCTGGAGTGGTTCAAGGTCCCCCCTGTAGCAATGGTGGCCTTCCAGGC
AAG
CCCTGTCCCCCAATCACCTCTGTAGACAAATCCTATGGTGGCTACGAGGTGGTGGGTGGCTCCTCTG
AC
AGTTATCTGGTTCCAGGCATGACCTACAGTAAGGGTAAAATCTACCCTGTGGGCTACTTCACCAAAGA
G
AACCCTGTGAAAGGCTCTCCAGGGGTCCCTTCCTTTGCAGCTGGGCCCCCCATCTCTGAGGGCAAATAC
TTC
TCCAGCAACCCCATCATCCCCAGCCAGTCGGCAGCTTCCTCGGCCATTGCATTCCAGCCAGTGGGGA
CT
GGTGGGGTCCAGCTCTGTGGAGGCGGCTCCACGGGCTCCAAGGGACCCTGCTCTCCCTCCAGTTCTCG
A
GTCCCCAGCAGTTCTAGCATTTCCAGCAGCTCCGGTTTACCCTACCATCCCTGCGGCAGTGCTTCCCAG
AGC
CCCTGCTCCCCACCAGGCACCGGCTCCTTCAGCAGCAGCTCCAGTTCCCAATCCAGTGGCAAAATCA
TC
CTTCAGCCTTGTGGCAGCAAGTCCAGCTCTTCTGGTCACCCTTGCATGTCTGTCTCCTCCTTGACACT
G
ACTGGGGGCCCCGATGGCTCTCCCCATCCTGATCCCTCCGCTGGTGCCAAGCCCTGTGGCTCCAGCAGT
GCT
GGAAAGATCCCCTGCCGCTCCATCCGGGATATCCTAGCCCAAGTGAAGCCTCTGGGGCCCCAGCTAG
CT
GACCCTGAAGTTTTCCTACCCCAAGGAGAGTTACTCAACAGTCCATAA


Translation (529 aa):
MGSSRAPWMGRVGGHGMMALLLAGLLLPGTLAKSIGTFSDPCKDPTRITSPNDPCLTGKGDSSGFSSYSG
S
SSSGSSISSARSSGGGSSGSSSGSSIAQGGSAGSFKPGTGYSQVSYSSGSGSSLQGASGSSQLGSSSSH
S
GNSGSHSGSSSSHSSSSSSFQFSSSSFQVGNGSALPTNDNSYRGILNPSQPGQSSSSSQTFGVSSSGQS
V
SSNQRPCSSDIPDSPCSGGPIVSHSGPYIPSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPG
K
PCPPITSVDKSYGGYEVVGGSSDSYLVPGMTYSKGKIYPVGYFTKENPVKGSPGVPSFAAGPPISEGKY
F
SSNPIIPSQSAASSAIAFQPVGTGGVQLCGGGSTGSKGPCSPSSSRVPSSSSISSSSGLPYHPCGSASQ
S
PCSPPGTGSFSSSSSSQSSGKIILQPCGSKSSSSGHPCMSVSSLTLTGGPDGSPHPDPSAGAKPCGSSS
A
GKIPCRSIRDILAQVKPLGPQLADPEVFLPQGELLNSP




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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