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Report for CCDS33842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33842.1 Public Homo sapiens 3 SLC41A3 24 110 108 CCDS HistoryNCBI Gene:54946Re-query CCDS DB by CCDS ID:33842.1Re-query CCDS DB by GeneID:54946See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346785.9 ENSP00000264471.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346785.9Link to Ensembl Protein Viewer:ENSP00000264471.6Re-query CCDS DB by Nucleotide ID:ENST00000346785Re-query CCDS DB by Protein ID:ENSP00000264471
Original member Current member NCBI NM_001008486.2 NP_001008486.2 Accepted alive Link to Nucleotide Sequence:NM_001008486.2Link to Protein Sequence:NP_001008486.2Re-query CCDS DB by Nucleotide ID:NM_001008486Re-query CCDS DB by Protein ID:NP_001008486Link to BLAST:NP_001008486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008486.2 471 Q96GZ6-3 471 100% 0 0

Chromosomal Locations for CCDS 33842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126006407 126006564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126007114 126007225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126008732 126008880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126012615 126012749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126015494 126015573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126016731 126016875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126022786 126022932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126026335 126026479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126033607 126033678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126067947 126068219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGATGGGACAGAGACCCGGCAGCGGAGGCTGGACAGCTGTGGCAAGCCAGGGGAGCTGGGGCTTCCTC
ACCCCCTCAGCACAGGAGGACTCCCTGTAGCCTCAGAAGATGGAGCTCTCAGGGCCCCTGAGAGCCAAAG
CGTGACCCCCAAGCCACTGGAGACTGAGCCTAGCAGGGAGACCACCTGGTCCATAGGCCTTCAGGTGACC
GTGCCCTTCATGTTTGCAGGCCTGGGACTGTCCTGGGCCGGCATGCTTCTGGACTATTTCCAGGCCAACA
CTGGACAAATTGATGACCCCCAGGAGCAGCACAGAGTCATCAGCAGCAACCTGGCCCTCATCCAGGTGCA
GGCCACTGTCGTGGGGCTCTTGGCTGCTGTGGCTGCGCTGCTGTTGGGCGTGGTGTCTCGAGAGGAAGTG
GATGTCGCCAAGGTGGAGTTGCTGTGTGCCAGCAGTGTCCTCACTGCCTTCCTTGCAGCCTTTGCCCTGG
GGGTGCTGATGGTCTGTATAGTGATTGGTGCTCGAAAGCTCGGGGTCAACCCAGACAACATTGCCACGCC
CATTGCAGCCAGCCTGGGAGACCTCATCACACTGTCCATTCTGGCTTTGGTTAGCAGCTTCTTCTACAGA
CACAAAGATAGTCGGTATCTGACGCCGCTGGTCTGCCTCAGCTTTGCGGCTCTGACCCCAGTGTGGGTCC
TCATTGCCAAGCAGAGCCCACCCATCGTGAAGATCCTGAAGTTTGGCTGGTTCCCAATCATCCTGGCCAT
GGTCATCAGCAGTTTCGGAGGACTCATCTTGAGCAAAACCGTTTCTAAACAGCAGTACAAAGGCATGGCG
ATATTTACCCCCGTCATATGTGGTGTTGGTGGCAATCTGGTGGCCATTCAGACCAGCCGAATCTCAACCT
ACCTGCACATGTGGAGTGCACCTGGCGTCCTGCCCCTCCAGATGAAGAAATTCTGGCCCAACCCGTGTTC
TACTTTCTGCACGTCAGAAATCAATTCCATGTCAGCTCGAGTCCTGCTCTTGCTGGTGGTCCCAGGCCAT
CTGATTTTCTTCTACATCATCTACCTGGTGGAGGGTCAGTCAGTCATAAACAGCCAGACCTTTGTGGTGC
TCTACCTGCTGGCAGGCCTGATCCAGGTGACAATCCTGCTGTACCTCGCAGAAGTGATGGTTCGGCTGAC
TTGGCACCAGGCCCTGGATCCTGACAACCACTGCATCCCCTACCTTACAGGGCTGGGGGACCTGCTCGGT
TCAAGCTCCGTGGGCCACACTGCTGCTGTGCCAAGAAGGTGTACAGCCTCCCCAGGATGGGGCCTCATAC
AACCCTTCATCTGCACTCAACATTTAATCGTGTCCTTGCTGTCTTTTTATTTTCCTTTTTGTTTGTTAGC
AAAAACCTCTATTTAG

Translation (471 aa):
MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRETTWSIGLQVT
VPFMFAGLGLSWAGMLLDYFQANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEV
DVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALVSSFFYR
HKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMA
IFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGH
LIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG
SSSVGHTAAVPRRCTASPGWGLIQPFICTQHLIVSLLSFYFPFCLLAKTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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