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Report for CCDS33662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33662.1 Public Homo sapiens 22 RTL6 24 110 108 CCDS HistoryNCBI Gene:84247Re-query CCDS DB by CCDS ID:33662.1Re-query CCDS DB by GeneID:84247See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341255.4 ENSP00000340434.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341255.4Link to Ensembl Protein Viewer:ENSP00000340434.3Re-query CCDS DB by Nucleotide ID:ENST00000341255Re-query CCDS DB by Protein ID:ENSP00000340434
Original member Current member NCBI NM_032287.3 NP_115663.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032287.3Link to Protein Sequence:NP_115663.2Re-query CCDS DB by Nucleotide ID:NM_032287Re-query CCDS DB by Protein ID:NP_115663Link to BLAST:NP_115663.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115663.2 239 Q6ICC9 239 100% 0 0

Chromosomal Locations for CCDS 33662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 44496837 44497556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGTGCAGCCGCAGACGTCCAAAGCTGAAAGCCCAGCCTTGGCAGCGTCTCCGAATGCCCAGATGGATG
ACGTTATTGACACCCTGACCTCCCTGCGCCTCACCAACTCGGCGCTGAGGCGGGAGGCTTCCACCCTGCG
GGCGGAGAAGGCCAATCTCACCAACATGCTGGAGAGCGTGATGGCAGAGCTGACCTTGTTACGCACCAGG
GCGCGGATCCCGGGGGCTCTGCAGATCACCCCGCCCATCTCCTCAATTACTTCAAACGGGACTCGACCCA
TGACCACACCTCCAACCTCTCTGCCCGAGCCCTTTTCCGGGGACCCAGGCCGGTTGGCGGGGTTCCTGAT
GCAGATGGACAGATTCATGATCTTCCAGGCCTCCCGCTTCCCGGGTGAGGCCGAGCGTGTGGCCTTCCTT
GTGTCTCGACTGACTGGGGAGGCGGAGAAGTGGGCTATCCCCCACATGCAACCTGACAGCCCCTTGCGCA
ACAACTATCAGGGGTTCCTGGCAGAGTTGCGGAGAACCTACAAGTCTCCGCTCCGGCATGCGCGGCGCGC
CCAAATCAGGAAGACTTCTGCCTCTAATAGGGCTGTGCGAGAGAGGCAGATGCTCTGCCGCCAGCTGGCC
TCTGCGGGCACGGGGCCTTGCCCAGTGCATCCAGCTTCCAACGGGACTAGTCCAGCGCCAGCCCTGCCTG
CCCGAGCACGGAATCTTTAA

Translation (239 aa):
MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESVMAELTLLRTR
ARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFL
VSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLRHARRAQIRKTSASNRAVRERQMLCRQLA
SAGTGPCPVHPASNGTSPAPALPARARNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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