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Report for CCDS33595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33595.1 Public Homo sapiens 22 HDHD5 24 110 108 CCDS HistoryNCBI Gene:27440Re-query CCDS DB by CCDS ID:33595.1Re-query CCDS DB by GeneID:27440See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336737.8 ENSP00000337358.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336737.8Link to Ensembl Protein Viewer:ENSP00000337358.4Re-query CCDS DB by Nucleotide ID:ENST00000336737Re-query CCDS DB by Protein ID:ENSP00000337358
Original member Current member NCBI NM_033070.3 NP_149061.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033070.3Link to Protein Sequence:NP_149061.1Re-query CCDS DB by Nucleotide ID:NM_033070Re-query CCDS DB by Protein ID:NP_149061Link to BLAST:NP_149061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149061.1 423 Q9BXW7-1 423 100% 0 0

Chromosomal Locations for CCDS 33595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 17138021 17138357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17138550 17138738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17141059 17141233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17143098 17143131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17145024 17145117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17148448 17148560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17149542 17149745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17159126 17159251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCTGCGTGGGGCTGTGTGGCTGCGCTCGGCGCGGCGCGTGGGCTTTGCTGGCGGGCGGCGCGCGCGG
CTGCGGGGCTCCAGGGCCGCCCCGCCCGCAGGTGCTATGCTGTGGGCCCCGCTCAGAGCCCACCCACCTT
TGGGTTCCTGTTGGACATCGATGGAGTGCTTGTGCGGGGCCACAGAGTGATCCCTGCTGCTCTGAAAGCC
TTCCGAAGGCTGGTGAACTCCCAGGGGCAGCTGCGGGTGCCCGTGGTTTTTGTTACAAATGCTGGGAACA
TCTTACAACACAGCAAAGCCCAGGAGCTGTCAGCCCTGCTGGGGTGCGAGGTGGATGCAGACCAAGTTAT
CCTCTCTCACAGCCCCATGAAGCTCTTCTCCGAGTACCATGAGAAGCGGATGCTGGTGTCTGGACAGGGG
CCCGTGATGGAAAATGCCCAGGGACTGGGCTTCCGAAATGTCGTCACCGTGGATGAGCTGCGGATGGCCT
TTCCTCTGCTTGACATGGTGGACCTGGAGCGGCGGCTAAAGACCACGCCCCTCCCGAGGAATGACTTCCC
CCGCATTGAAGGGGTGCTCCTCCTAGGGGAGCCGGTCCGCTGGGAGACCAGCCTGCAGCTGATCATGGAT
GTCCTCCTCAGCAATGGGAGCCCTGGGGCTGGCCTGGCAACACCCCCCTACCCCCACCTCCCCGTCCTAG
CCAGCAACATGGATCTCCTGTGGATGGCTGAAGCCAAGATGCCCAGGTTTGGACATGGCACCTTTCTGCT
GTGCCTGGAAACCATTTACCAGAAAGTGACGGGCAAGGAGCTGAGATACGAGGGCCTGATGGGCAAACCC
AGCATCCTCACTTACCAGTATGCCGAGGACCTGATCAGGCGACAGGCGGAGAGGCGGGGCTGGGCCGCCC
CCATCCGGAAGCTCTATGCTGTGGGTGATAACCCTATGTCTGACGTATACGGCGCCAACCTGTTCCACCA
GTACCTGCAGAAGGCAACGCATGATGGGGCGCCAGAACTAGGGGCCGGGGGCACACGGCAGCAACAGCCC
TCAGCAAGCCAGAGCTGCATCTCCATCCTGGTGTGTACAGGCGTCTACAATCCCAGGAACCCACAGTCCA
CGGAGCCTGTCCTTGGAGGAGGGGAGCCTCCATTCCACGGGCACCGAGACTTATGCTTCAGTCCAGGGCT
CATGGAGGCCTCCCACGTGGTGAATGACGTGAATGAGGCTGTGCAGCTGGTCTTCCGCAAGGAGGGCTGG
GCTTTGGAGTGA

Translation (423 aa):
MAAWGCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRGHRVIPAALKA
FRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQG
PVMENAQGLGFRNVVTVDELRMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMD
VLLSNGSPGAGLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP
SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPELGAGGTRQQQP
SASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEASHVVNDVNEAVQLVFRKEGW
ALE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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