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Report for CCDS33580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33580.1 Public Homo sapiens 21 GATD3 24 110 108 CCDS HistoryNCBI Gene:8209Re-query CCDS DB by CCDS ID:33580.1Re-query CCDS DB by GeneID:8209See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291577.11 ENSP00000291577.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291577.11Link to Ensembl Protein Viewer:ENSP00000291577.6Re-query CCDS DB by Nucleotide ID:ENST00000291577Re-query CCDS DB by Protein ID:ENSP00000291577
Original member Current member NCBI NM_004649.8 NP_004640.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004649.8Link to Protein Sequence:NP_004640.4Re-query CCDS DB by Nucleotide ID:NM_004649Re-query CCDS DB by Protein ID:NP_004640Link to BLAST:NP_004640.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004640.4 268 P0DPI2 268 100% 0 0

Chromosomal Locations for CCDS 33580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44133698 44133838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44134102 44134154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44136060 44136173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44137177 44137296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44140250 44140342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44143205 44143361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44144821 44144949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGGCTGTGAGGGTCCTGGTGGCCTCGAGGCTCGCTGCGGCATCTGCATTCACGTCCCTGTCCCCCG
GCGGTCGGACGCCTTCCCAGCGCGCAGCCCTTCACCTCTCCGTGCCGCGCCCCGCGGCCAGGGTCGCGCT
GGTGCTGTCTGGATGCGGAGTCTACGATGGGACCGAGATCCACGAGGCCTCGGCGATCCTGGTGCACCTG
AGCCGTGGAGGGGCTGAAGTCCAGATCTTTGCTCCTGACGTCCCTCAGATGCACGTGATTGACCACACCA
AGGGGCAGCCGTCCGAAGGCGAGAGCAGGAATGTTTTGACCGAGTCTGCGAGGATCGCCCGTGGCAAAAT
CACAGACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCT
AAAAACCTGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGA
AGGAGTTCCACCAGGCCGGGAAGCCCATCGGCTTGTGCTGCATTGCACCTGTCCTCGCGGCCAAGGTGCT
CAGAGGCGTCGAGGTGACTGTGGGCCACGAGCAGGAGGAAGGTGGCAAGTGGCCTTATGCCGGGACCGCA
GAGGCCATCAAGGCCCTGGGTGCCAAGCACTGCGTGAAGGAAGTGGTCGAAGCTCACGTGGACCAGAAAA
ACAAGGTGGTCACGACCCCAGCCTTCATGTGCGAGACGGCACTCCACTACATCCATGATGGGATCGGAGC
CATGGTGAGGAAGGTGCTGGAACTCACTGGAAAGTGA

Translation (268 aa):
MAAVRVLVASRLAAASAFTSLSPGGRTPSQRAALHLSVPRPAARVALVLSGCGVYDGTEIHEASAILVHL
SRGGAEVQIFAPDVPQMHVIDHTKGQPSEGESRNVLTESARIARGKITDLANLSAANHDAAIFPGGFGAA
KNLSTFAVDGKDCKVNKEVERVLKEFHQAGKPIGLCCIAPVLAAKVLRGVEVTVGHEQEEGGKWPYAGTA
EAIKALGAKHCVKEVVEAHVDQKNKVVTTPAFMCETALHYIHDGIGAMVRKVLELTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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