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Report for CCDS33252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33252.1 Public Homo sapiens 2 FAM178B 24 110 108 CCDS HistoryNCBI Gene:51252Re-query CCDS DB by CCDS ID:33252.1Re-query CCDS DB by GeneID:51252See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393526.6 ENSP00000377160.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393526.6Link to Ensembl Protein Viewer:ENSP00000377160.2Re-query CCDS DB by Nucleotide ID:ENST00000393526Re-query CCDS DB by Protein ID:ENSP00000377160
Original member Current member NCBI NM_016490.5 NP_057574.2 Accepted alive Link to Nucleotide Sequence:NM_016490.5Link to Protein Sequence:NP_057574.2Re-query CCDS DB by Nucleotide ID:NM_016490Re-query CCDS DB by Protein ID:NP_057574Link to BLAST:NP_057574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057574.2 119 Q8IXR5-2 119 100% 0 0

Chromosomal Locations for CCDS 33252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96876276 96876308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96877890 96878042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96878416 96878493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96893926 96894021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGAGGCCATCATCTCTCAGGCAATACCTGGACTCTGTGCCCTTGCCACCCTGCCAGGAGCAACAGCCAA
AGGCTAGTGCCGAGCTAGACCACAAGGCCTGCTACCTGTGCCACAGCTTGCTGATGCTGGCCGGGGTAGT
TGTTAGCTGCCAGGACATCACTCCAGACCAGTGGGGCGAGCTGCAGCTGCTGTGCATGCAGTTGGACCGC
CACATCAGCACGCAGATCCGGGAGAGCCCCCAGGCCATGCACCGCACCATGCTCAAGGACCTGGCTACCC
AGACCTACATCCGTTGGCAGGAGCTGCTGACCCACTGCCAGCCCCAGGCCCAGTATTTCAGCCCCTGGAA
AGACATCTAA

Translation (119 aa):
MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGELQLLCMQLDR
HISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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