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Report for CCDS3269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3269.1 Public Homo sapiens 3 MAGEF1 24 110 108 CCDS HistoryNCBI Gene:64110Re-query CCDS DB by CCDS ID:3269.1Re-query CCDS DB by GeneID:64110See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3269.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317897.5 ENSP00000315064.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317897.5Link to Ensembl Protein Viewer:ENSP00000315064.3Re-query CCDS DB by Nucleotide ID:ENST00000317897Re-query CCDS DB by Protein ID:ENSP00000315064
Original member Current member NCBI NM_022149.5 NP_071432.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022149.5Link to Protein Sequence:NP_071432.2Re-query CCDS DB by Nucleotide ID:NM_022149Re-query CCDS DB by Protein ID:NP_071432Link to BLAST:NP_071432.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071432.2 307 Q9HAY2 307 100% 0 0

Chromosomal Locations for CCDS 3269.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184710898 184711821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTTGCAGACACCAGAGAGCAGGGGGCTCCCGGTCCCGCAGGCCGAGGGGGAGAAGGATGGCGGCCATG
ATGGTGAGACCCGGGCCCCGACCGCCTCGCAGGAGCGCCCCAAGGAGGAGCTTGGCGCCGGGAGGGAGGA
GGGGGCTGCGGAGCCCGCCCTCACCCGGAAAGGCGCGAGGGCCTTGGCGGCCAAAGCCTTGGCAAGGCGC
AGGGCCTACCGCCGGCTGAATCGGACGGTGGCGGAGTTGGTGCAGTTCCTCCTGGTGAAAGACAAGAAGA
AGAGTCCCATCACACGCTCGGAGATGGTGAAATACGTTATTGGAGACTTGAAGATTCTGTTCCCGGACAT
CATCGCAAGGGCCGCAGAGCATCTGCGGTATGTCTTTGGTTTTGAGCTGAAACAGTTTGACCGCAAGCAC
CACACTTACATCCTGATCAACAAACTAAAACCTCTGGAGGAGGAGGAGGAGGAGGATCTGGGAGGAGATG
GCCCCAGATTGGGTCTGTTAATGATGATCCTGGGCCTTATCTATATGAGAGGTAATAGCGCCAGGGAGGC
CCAGGTCTGGGAGATGCTGCGTCGGTTGGGGGTGCAACCCTCAAAGTATCATTTCCTCTTTGGGTATCCG
AAGAGGCTTATTATGGAAGATTTTGTGCAGCAGCGATATCTCAGTTACAGGCGGGTGCCTCACACCAATC
CACCAGAATATGAATTCTCTTGGGGTCCCCGAAGCAACCTGGAAATCAGCAAGATGGAAGTCCTGGGGTT
CGTGGCCAAACTGCATAAGAAGGAACCGCAGCACTGGCCAGTGCAGTACCGTGAGGCCCTAGCAGACGAG
GCCGACAGGGCCAGAGCCAAGGCCAGAGCTGAAGCCAGTATGAGGGCCAGGGCCAGTGCTAGGGCCGGCA
TCCACCTCTGGTGA

Translation (307 aa):
MLQTPESRGLPVPQAEGEKDGGHDGETRAPTASQERPKEELGAGREEGAAEPALTRKGARALAAKALARR
RAYRRLNRTVAELVQFLLVKDKKKSPITRSEMVKYVIGDLKILFPDIIARAAEHLRYVFGFELKQFDRKH
HTYILINKLKPLEEEEEEDLGGDGPRLGLLMMILGLIYMRGNSAREAQVWEMLRRLGVQPSKYHFLFGYP
KRLIMEDFVQQRYLSYRRVPHTNPPEYEFSWGPRSNLEISKMEVLGFVAKLHKKEPQHWPVQYREALADE
ADRARAKARAEASMRARASARAGIHLW


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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