NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32619.1 Public Homo sapiens 17 SLFN5 24 110 108 CCDS HistoryNCBI Gene:162394Re-query CCDS DB by CCDS ID:32619.1Re-query CCDS DB by GeneID:162394See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299977.9 ENSP00000299977.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299977.9Link to Ensembl Protein Viewer:ENSP00000299977.3Re-query CCDS DB by Nucleotide ID:ENST00000299977Re-query CCDS DB by Protein ID:ENSP00000299977
Original member Current member NCBI NM_144975.4 NP_659412.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144975.4Link to Protein Sequence:NP_659412.3Re-query CCDS DB by Nucleotide ID:NM_144975Re-query CCDS DB by Protein ID:NP_659412Link to BLAST:NP_659412.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659412.3 891 Q08AF3-1 891 100% 0 0

Chromosomal Locations for CCDS 32619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35258691 35259702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35260971 35261096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35264183 35264903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35265072 35265888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGAGTCTTAGGATTGATGTGGATACAAACTTTCCTGAGTGTGTTGTAGATGCAGGAAAAGTCACCCTTG
GGACTCAGCAGAGGCAGGAGATGGACCCTCGCCTGCGGGAGAAACAGAATGAAATCATCCTGCGAGCAGT
ATGTGCTCTGCTGAATTCTGGTGGGGGCATAATCAAGGCTGAGATTGAGAACAAAGGCTACAATTATGAA
CGTCATGGAGTAGGATTGGATGTGCCTCCAATTTTCAGAAGCCATTTAGATAAGATGCAGAAGGAAAACC
ACTTTTTGATTTTTGTGAAATCATGGAACACAGAGGCTGGTGTGCCACTTGCTACCTTATGCTCCAATTT
GTACCACAGAGAGAGAACATCCACCGATGTCATGGATTCTCAGGAAGCTCTGGCATTCCTCAAATGCAGG
ACTCAGACTCCAACGAATATTAATGTTTCCAATTCATTAGGTCCACAGGCAGCTCAGGGTAGTGTACAAT
ATGAAGGTAACATAAATGTGTCAGCTGCTGCTTTATTTGATAGAAAGCGGCTTCAGTATCTGGAAAAACT
CAACCTTCCTGAGTCCACACATGTTGAATTTGTAATGTTCTCGACAGACGTGTCACACTGTGTTAAAGAC
AGACTTCCGAAGTGTGTTTCTGCATTTGCAAATACTGAAGGAGGATATGTATTTTTTGGTGTGCATGATG
AGACTTGTCAAGTGATTGGATGTGAAAAAGAGAAAATAGACCTTACGAGCTTGAGGGCTTCTATTGATGG
CTGTATTAAGAAGCTACCTGTCCATCATTTCTGCACACAGAGGCCTGAGATAAAATATGTCCTTAACTTC
CTTGAAGTGCATGATAAGGGGGCCCTCCGTGGATATGTCTGTGCAATCAAGGTGGAGAAATTCTGCTGTG
CGGTGTTTGCCAAAGTGCCTAGTTCCTGGCAGGTGAAGGACAACCGTGTGAGACAATTGCCCACAAGAGA
ATGGACTGCTTGGATGATGGAAGCTGACCCAGACCTTTCCAGGTGTCCTGAGATGGTTCTCCAGTTGAGT
TTGTCATCTGCCACGCCCCGCAGCAAGCCTGTGTGCATTCATAAGAATTCGGAATGTCTGAAAGAGCAGC
AGAAACGCTACTTTCCAGTATTTTCAGACAGAGTGGTATATACTCCAGAAAGCCTCTACAAGGAACTCTT
CTCACAACATAAAGGACTCAGAGACTTAATAAATACAGAAATGCGCCCTTTCTCTCAAGGAATATTGATT
TTTTCTCAAAGCTGGGCTGTGGATTTAGGTCTGCAAGAGAAGCAGGGAGTCATCTGTGATGCTCTTCTAA
TTTCCCAGAACAACACCCCTATTCTCTACACCATCTTCAGCAAGTGGGATGCGGGGTGCAAGGGCTATTC
TATGATAGTTGCCTATTCTTTGAAGCAGAAGCTGGTGAACAAAGGCGGCTACACTGGGAGGTTATGCATC
ACCCCCTTGGTCTGTGTGCTGAATTCTGATAGAAAAGCACAGAGCGTTTACAGTTCGTATTTACAAATTT
ACCCTGAATCCTATAACTTCATGACCCCCCAGCACATGGAAGCCCTGTTACAGTCCCTCGTGATAGTCTT
GCTTGGGTTCAAATCCTTCTTAAGTGAAGAGCTGGGCTCTGAGGTTTTGAACCTACTGACAAATAAACAG
TATGAGTTGCTTTCAAAGAACCTTCGCAAGACCAGAGAGTTGTTTGTTCATGGCTTACCTGGATCAGGGA
AGACTATCTTGGCTCTTAGGATCATGGAGAAGATCAGGAATGTGTTTCACTGTGAACCGGCTAACATTCT
CTACATCTGTGAAAACCAGCCCCTGAAGAAGTTGGTGAGTTTCAGCAAGAAAAACATCTGCCAGCCAGTG
ACCCGGAAAACCTTCATGAAAAACAACTTTGAACACATCCAGCACATTATCATTGATGACGCTCAGAATT
TCCGTACTGAAGATGGGGACTGGTATGGGAAAGCAAAGTTCATCACTCAGACAGCAAGGGATGGCCCAGG
AGTTCTCTGGATCTTTCTGGACTACTTTCAGACCTATCACTTGAGTTGCAGTGGCCTCCCCCCTCCCTCA
GACCAGTATCCAAGAGAAGAGATCAACAGAGTGGTCCGCAATGCAGGTCCAATAGCTAATTACCTACAAC
AAGTAATGCAGGAAGCCCGACAAAATCCTCCACCTAACCTCCCCCCTGGGTCCCTGGTGATGCTCTATGA
ACCTAAATGGGCTCAAGGTGTCCCAGGCAACTTAGAGATTATTGAAGACTTGAACTTGGAGGAGATACTG
ATCTATGTAGCGAATAAATGCCGTTTTCTCTTGCGGAATGGTTATTCTCCGAAGGATATTGCTGTGCTTT
TCACCAAAGCAAGTGAAGTGGAAAAATATAAAGACAGGCTTCTAACAGCAATGAGGAAGAGAAAACTGTC
TCAGCTCCATGAGGAGTCTGATCTGTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCGATCACATT
GTGTTGGACAGTGTCTGTCGATTTTCAGGCCTGGAAAGAAATATCGTGTTTGGAATCAATCCAGGAGTAG
CCCCACCGGCTGGGGCCTACAATCTTCTGCTCTGTTTGGCTTCTAGGGCAAAAAGACATCTGTATATTCT
GAAGGCTTCTGTGTGA

Translation (891 aa):
MSLRIDVDTNFPECVVDAGKVTLGTQQRQEMDPRLREKQNEIILRAVCALLNSGGGIIKAEIENKGYNYE
RHGVGLDVPPIFRSHLDKMQKENHFLIFVKSWNTEAGVPLATLCSNLYHRERTSTDVMDSQEALAFLKCR
TQTPTNINVSNSLGPQAAQGSVQYEGNINVSAAALFDRKRLQYLEKLNLPESTHVEFVMFSTDVSHCVKD
RLPKCVSAFANTEGGYVFFGVHDETCQVIGCEKEKIDLTSLRASIDGCIKKLPVHHFCTQRPEIKYVLNF
LEVHDKGALRGYVCAIKVEKFCCAVFAKVPSSWQVKDNRVRQLPTREWTAWMMEADPDLSRCPEMVLQLS
LSSATPRSKPVCIHKNSECLKEQQKRYFPVFSDRVVYTPESLYKELFSQHKGLRDLINTEMRPFSQGILI
FSQSWAVDLGLQEKQGVICDALLISQNNTPILYTIFSKWDAGCKGYSMIVAYSLKQKLVNKGGYTGRLCI
TPLVCVLNSDRKAQSVYSSYLQIYPESYNFMTPQHMEALLQSLVIVLLGFKSFLSEELGSEVLNLLTNKQ
YELLSKNLRKTRELFVHGLPGSGKTILALRIMEKIRNVFHCEPANILYICENQPLKKLVSFSKKNICQPV
TRKTFMKNNFEHIQHIIIDDAQNFRTEDGDWYGKAKFITQTARDGPGVLWIFLDYFQTYHLSCSGLPPPS
DQYPREEINRVVRNAGPIANYLQQVMQEARQNPPPNLPPGSLVMLYEPKWAQGVPGNLEIIEDLNLEEIL
IYVANKCRFLLRNGYSPKDIAVLFTKASEVEKYKDRLLTAMRKRKLSQLHEESDLLLQIGDASDVLTDHI
VLDSVCRFSGLERNIVFGINPGVAPPAGAYNLLLCLASRAKRHLYILKASV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH