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Report for CCDS32495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32495.1 Public Homo sapiens 16 SLC38A8 24 110 108 CCDS HistoryNCBI Gene:146167Re-query CCDS DB by CCDS ID:32495.1Re-query CCDS DB by GeneID:146167See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 32495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299709.8 ENSP00000299709.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299709.8Link to Ensembl Protein Viewer:ENSP00000299709.3Re-query CCDS DB by Nucleotide ID:ENST00000299709Re-query CCDS DB by Protein ID:ENSP00000299709
Original member Current member NCBI NM_001080442.3 NP_001073911.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080442.3Link to Protein Sequence:NP_001073911.1Re-query CCDS DB by Nucleotide ID:NM_001080442Re-query CCDS DB by Protein ID:NP_001073911Link to BLAST:NP_001073911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073911.1 435 A6NNN8 435 100% 0 0

Chromosomal Locations for CCDS 32495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84009784 84009877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84013001 84013052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84016519 84016727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84017140 84017287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84022775 84022889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84029494 84029551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84031867 84031968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84033328 84033469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84036702 84036900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84041969 84042157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGAGGGACAGACCCCAGGAAGCAGGGGCCTTCCAGAAAAGCCTCACCCTGCCACGGCTGCTGCCACTC
TGTCCTCGATGGGCGCTGTCTTCATCCTCATGAAGTCCGCGCTGGGAGCTGGCCTGCTCAACTTCCCCTG
GGCCTTCTCCAAAGCGGGCGGAGTGGTCCCTGCCTTCCTGGTGGAGCTGGTCTCGTTGGTCTTCCTGATC
AGCGGGCTGGTCATCCTGGGCTATGCTGCTGCTGTCAGTGGCCAGGCCACCTACCAGGGTGTGGTCAGGG
GGCTGTGTGGCCCTGCCATTGGGAAGCTGTGTGAGGCCTGCTTCCTCCTCAACCTGCTCATGATCTCCGT
GGCCTTCCTCAGGGTGATCGGGGACCAGCTGGAGAAGCTGTGTGACTCCCTCCTGTCTGGCACCCCGCCC
GCCCCGCAGCCGTGGTACGCAGACCAGCGCTTCACCCTGCCCCTGCTCTCCGTGCTGGTCATCCTGCCCC
TGTCTGCCCCGCGGGAGATCGCCTTCCAGAAATACACAAGCATCCTAGGCACTCTGGCTGCCTGTTACCT
GGCCCTGGTCATCACCGTGCAGTACTACCTCTGGCCCCAGGGCCTCGTGCGTGAGTCCCATCCTTCACTG
AGCCCTGCCTCCTGGACCTCTGTGTTCAGTGTCTTCCCCACCATCTGCTTCGGGTTTCAGTGTCACGAAG
CTGCCGTCTCCATCTACTGCAGCATGCGCAAACGGAGCCTCTCCCACTGGGCCCTGGTGTCTGTGCTGTC
CTTGCTGGCCTGCTGCCTCATCTATTCACTGACGGGGGTTTATGGCTTCCTGACTTTTGGGACAGAAGTT
TCTGCTGACGTCTTGATGTCCTACCCAGGCAATGATATGGTCATCATTGTGGCCCGGGTCCTTTTTGCTG
TCTCCATCGTAACTGTCTACCCCATCGTGCTCTTCCTGGGGAGGTCAGTGATGCAGGACTTCTGGAGGAG
GAGCTGCTTGGGGGGATGGGGGCCCAGCGCCCTGGCCGACCCCTCAGGGCTGTGGGTCCGGATGCCGCTG
ACCATCCTGTGGGTCACCGTGACGCTCGCCATGGCGCTGTTTATGCCTGACCTCAGCGAGATCGTCAGCA
TCATCGGAGGCATCAGTTCCTTCTTCATCTTCATCTTCCCAGGTTTGTGCCTCATCTGTGCAATGGGTGT
CGAGCCTATAGGACCAAGAGTCAAGTGCTGCCTGGAGGTCTGGGGAGTGGTCTCTGTGCTGGTCGGCACC
TTCATCTTTGGGCAGAGCACGGCGGCAGCGGTCTGGGAGATGTTCTGA

Translation (435 aa):
MEGQTPGSRGLPEKPHPATAAATLSSMGAVFILMKSALGAGLLNFPWAFSKAGGVVPAFLVELVSLVFLI
SGLVILGYAAAVSGQATYQGVVRGLCGPAIGKLCEACFLLNLLMISVAFLRVIGDQLEKLCDSLLSGTPP
APQPWYADQRFTLPLLSVLVILPLSAPREIAFQKYTSILGTLAACYLALVITVQYYLWPQGLVRESHPSL
SPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRKRSLSHWALVSVLSLLACCLIYSLTGVYGFLTFGTEV
SADVLMSYPGNDMVIIVARVLFAVSIVTVYPIVLFLGRSVMQDFWRRSCLGGWGPSALADPSGLWVRMPL
TILWVTVTLAMALFMPDLSEIVSIIGGISSFFIFIFPGLCLICAMGVEPIGPRVKCCLEVWGVVSVLVGT
FIFGQSTAAAVWEMF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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