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Report for CCDS32432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32432.1 Public Homo sapiens 16 SLX1A 24 110 108 CCDS HistoryNCBI Gene:548593Re-query CCDS DB by CCDS ID:32432.1Re-query CCDS DB by GeneID:548593See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 32432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345535.8 ENSP00000333945.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345535.8Link to Ensembl Protein Viewer:ENSP00000333945.4Re-query CCDS DB by Nucleotide ID:ENST00000345535Re-query CCDS DB by Protein ID:ENSP00000333945
Original member Current member NCBI NM_001015000.2 NP_001015000.1 Accepted alive Link to Nucleotide Sequence:NM_001015000.2Link to Protein Sequence:NP_001015000.1Re-query CCDS DB by Nucleotide ID:NM_001015000Re-query CCDS DB by Protein ID:NP_001015000Link to BLAST:NP_001015000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015000.1 161 Q9BQ83-2 161 100% 0 0

Chromosomal Locations for CCDS 32432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30194085 30194272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30194740 30194791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30196974 30197101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30197270 30197357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30197437 30197466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGGTCCCGCGGGGGTCGCGGCGAGGCCAGGGCGCTTTTTCGGCGTCTACCTGCTCTACTGCCTGAACC
CCCGGTACCGGGGCCGCGTCTACGTGGGGTTCACTGTCAACACTGCTCGTCGGGTCCAGCAGCACAATGG
GGGCCGCAAAAAAGGCGGGGCCTGGCGGACCAGCGGGCGAGGGCCCTGGGAGATGGTGCTCGTCGTGCAC
GGCTTCCCGTCCTCCGTGGCCGCCCTTCGGGATGAAGAGGGGCCCTTGTGTTGCCCCCACCCTGGCTGCC
TGCTAAGGGCCCATGTGATCTGCCTGGCAGAGGAGTTTCTTCAGGAAGAACCAGGGCAGCTTCTGCCCCT
AGAGGGCCAATGCCCTTGCTGTGAGAAGTCACTGCTTTGGGGAGACCTGATCTGGCTGTGCCAGATGGAC
ACTGAGAAAGAAGTAGAAGACTCAGAATTAGAAGAGGCACACTGGACAGACCTGCTGGAGACCTGA

Translation (161 aa):
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVH
GFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMD
TEKEVEDSELEEAHWTDLLET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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