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Report for CCDS32109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32109.1 Public Homo sapiens 14 SRSF5 24 110 108 CCDS HistoryNCBI Gene:6430Re-query CCDS DB by CCDS ID:32109.1Re-query CCDS DB by GeneID:6430See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32109.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394366.6 ENSP00000377892.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394366.6Link to Ensembl Protein Viewer:ENSP00000377892.2Re-query CCDS DB by Nucleotide ID:ENST00000394366Re-query CCDS DB by Protein ID:ENSP00000377892
Original member Current member EBI ENST00000557154.6 ENSP00000451088.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000557154.6Link to Ensembl Protein Viewer:ENSP00000451088.1Re-query CCDS DB by Nucleotide ID:ENST00000557154Re-query CCDS DB by Protein ID:ENSP00000451088
Original member Current member EBI ENST00000553521.5 ENSP00000452123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553521.5Link to Ensembl Protein Viewer:ENSP00000452123.1Re-query CCDS DB by Nucleotide ID:ENST00000553521Re-query CCDS DB by Protein ID:ENSP00000452123
Original member Current member NCBI NM_001039465.2 NP_001034554.1 Accepted alive Link to Nucleotide Sequence:NM_001039465.2Link to Protein Sequence:NP_001034554.1Re-query CCDS DB by Nucleotide ID:NM_001039465Re-query CCDS DB by Protein ID:NP_001034554Link to BLAST:NP_001034554.1
Original member Current member NCBI NM_001320214.2 NP_001307143.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320214.2Link to Protein Sequence:NP_001307143.1Re-query CCDS DB by Nucleotide ID:NM_001320214Re-query CCDS DB by Protein ID:NP_001307143Link to BLAST:NP_001307143.1
Original member Current member NCBI NM_006925.5 NP_008856.2 Accepted alive Link to Nucleotide Sequence:NM_006925.5Link to Protein Sequence:NP_008856.2Re-query CCDS DB by Nucleotide ID:NM_006925Re-query CCDS DB by Protein ID:NP_008856Link to BLAST:NP_008856.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034554.1 272 Q13243-1 272 100% 0 0
NP_001307143.1 272 Q13243-1 272 100% 0 0
NP_008856.2 272 Q13243-1 272 100% 0 0

Chromosomal Locations for CCDS 32109.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69768157 69768282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69768604 69768674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69768798 69768896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69769182 69769251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69770467 69770540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69770995 69771105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69771194 69771461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAGTGGCTGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACGTGGAAAGATTCT
TCAAGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTTTGTGGAATTTGAGGATCC
AAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTCTGTAGTGAAAGGGTTACTATTGAA
CATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGACGATACTCTGACCGTTTTAGTAGTCGCAGAC
CTCGAAATGATAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGTCTTATAGTTGAGAATTTATCCTC
AAGAGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACGTTTGCGGATGCACAC
CGACCTAAATTAAATGAAGGGGTGGTTGAGTTTGCCTCTTATGGTGACTTAAAGAATGCTATTGAAAAAC
TTTCTGGAAAGGAAATAAATGGGAGAAAAATAAAATTAATTGAAGGCAGCAAAAGGCACAGTAGGTCAAG
AAGCAGGTCTCGATCCCGGACCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAA
TCTTACAGCCGGTCAAGAAGCAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTC
CCGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTGGATCGCCA
GAGGTCCCGGTCCCGATCAAGGTCCAGATCAGTTGACAGTGGCAATTAA

Translation (272 aa):
MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE
HARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAH
RPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK
SYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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