NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32002.1 Public Homo sapiens 13 CLYBL 24 110 108 CCDS HistoryNCBI Gene:171425Re-query CCDS DB by CCDS ID:32002.1Re-query CCDS DB by GeneID:171425See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339105.9 ENSP00000342991.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339105.9Link to Ensembl Protein Viewer:ENSP00000342991.4Re-query CCDS DB by Nucleotide ID:ENST00000339105Re-query CCDS DB by Protein ID:ENSP00000342991
Original member Current member EBI ENST00000376355.7 ENSP00000365533.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376355.7Link to Ensembl Protein Viewer:ENSP00000365533.4Re-query CCDS DB by Nucleotide ID:ENST00000376355Re-query CCDS DB by Protein ID:ENSP00000365533
Original member Current member EBI ENST00000689673.1 ENSP00000509937.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689673.1Link to Ensembl Protein Viewer:ENSP00000509937.1Re-query CCDS DB by Nucleotide ID:ENST00000689673Re-query CCDS DB by Protein ID:ENSP00000509937
Original member Current member NCBI NM_001393356.1 NP_001380285.1 Accepted alive Link to Nucleotide Sequence:NM_001393356.1Link to Protein Sequence:NP_001380285.1Re-query CCDS DB by Nucleotide ID:NM_001393356Re-query CCDS DB by Protein ID:NP_001380285Link to BLAST:NP_001380285.1
Original member Current member NCBI NM_001393357.1 NP_001380286.1 Accepted alive Link to Nucleotide Sequence:NM_001393357.1Link to Protein Sequence:NP_001380286.1Re-query CCDS DB by Nucleotide ID:NM_001393357Re-query CCDS DB by Protein ID:NP_001380286Link to BLAST:NP_001380286.1
Original member Current member NCBI NM_001393358.1 NP_001380287.1 Accepted alive Link to Nucleotide Sequence:NM_001393358.1Link to Protein Sequence:NP_001380287.1Re-query CCDS DB by Nucleotide ID:NM_001393358Re-query CCDS DB by Protein ID:NP_001380287Link to BLAST:NP_001380287.1
Original member Current member NCBI NM_001393359.2 NP_001380288.1 Accepted alive Link to Nucleotide Sequence:NM_001393359.2Link to Protein Sequence:NP_001380288.1Re-query CCDS DB by Nucleotide ID:NM_001393359Re-query CCDS DB by Protein ID:NP_001380288Link to BLAST:NP_001380288.1
Original member Current member NCBI NM_206808.5 NP_996531.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_206808.5Link to Protein Sequence:NP_996531.1Re-query CCDS DB by Nucleotide ID:NM_206808Re-query CCDS DB by Protein ID:NP_996531Link to BLAST:NP_996531.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380285.1 340 Q8N0X4-1 340 100% 0 0
NP_001380286.1 340 Q8N0X4-1 340 100% 0 0
NP_001380287.1 340 Q8N0X4-1 340 100% 0 0
NP_001380288.1 340 Q8N0X4-1 340 100% 0 0
NP_996531.1 340 Q8N0X4-1 340 100% 0 0

Chromosomal Locations for CCDS 32002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99606696 99606757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99772824 99773010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99858861 99859049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99862991 99863092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99864818 99864911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99866240 99866407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99870938 99871062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99891318 99891413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCGCTACGTCTGCTGCGGAGGGCGGCGCGCGGAGCTGCGGCGGCGGCGCTGCTGAGGCTGAAAGCGT
CTCTAGCAGCTGATATCCCCAGACTTGGATATAGTTCCTCATCCCATCACAAGTACATCCCCCGGAGGGC
AGTGCTTTATGTACCTGGAAATGATGAAAAGAAAATAAAGAAGATTCCATCCCTGAATGTAGATTGTGCA
GTGCTCGACTGTGAGGATGGAGTGGCTGCAAACAAAAAGAATGAAGCTCGACTGAGAATTGTAAAAACTC
TTGAAGACATTGATCTGGGCCCTACTGAAAAATGTGTGAGAGTCAACTCAGTTTCCAGTGGTCTGGCGGA
AGAAGACCTAGAGACCCTTTTGCAATCCCGGGTCCTTCCTTCCAGCCTGATGCTACCAAAGGTGGAAAGT
CCTGAAGAAATCCAGTGGTTTGCAGACAAATTTTCATTCCACTTAAAAGGCCGAAAACTTGAACAACCAA
TGAATTTAATCCCTTTTGTGGAAACTGCAATGGGTTTGCTCAATTTTAAGGCAGTGTGTGAAGAAACCCT
GAAGGTCGGGCCTCAAGTAGGTCTCTTTCTAGATGCAGTCGTTTTTGGAGGAGAAGACTTTCGAGCCAGC
ATAGGTGCAACAAGTAGTAAAGAAACCCTGGATATTCTCTACGCCCGGCAAAAGATTGTTGTCATAGCGA
AAGCCTTTGGTCTCCAAGCCATAGATCTGGTGTACATTGACTTTCGAGATGGAGCTGGGCTGCTTAGACA
GTCACGAGAAGGAGCCGCCATGGGCTTCACTGGTAAGCAGGTGATTCACCCTAACCAAATTGCCGTGGTC
CAGGAGCAGTTTTCTCCTTCCCCTGAAAAAATTAAGTGGGCTGAAGAACTGATTGCTGCCTTTAAAGAAC
ATCAACAATTAGGAAAGGGGGCCTTTACTTTCCAAGGGAGTATGATCGACATGCCATTACTGAAGCAGGC
CCAGAACACTGTTACGCTTGCCACCTCCATCAAGGAAAAATGA

Translation (340 aa):
MALRLLRRAARGAAAAALLRLKASLAADIPRLGYSSSSHHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCA
VLDCEDGVAANKKNEARLRIVKTLEDIDLGPTEKCVRVNSVSSGLAEEDLETLLQSRVLPSSLMLPKVES
PEEIQWFADKFSFHLKGRKLEQPMNLIPFVETAMGLLNFKAVCEETLKVGPQVGLFLDAVVFGGEDFRAS
IGATSSKETLDILYARQKIVVIAKAFGLQAIDLVYIDFRDGAGLLRQSREGAAMGFTGKQVIHPNQIAVV
QEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFQGSMIDMPLLKQAQNTVTLATSIKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH