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Report for CCDS31975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31975.1 Public Homo sapiens 13 PHF11 24 110 108 CCDS HistoryNCBI Gene:51131Re-query CCDS DB by CCDS ID:31975.1Re-query CCDS DB by GeneID:51131See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378319.8 ENSP00000367570.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378319.8Link to Ensembl Protein Viewer:ENSP00000367570.3Re-query CCDS DB by Nucleotide ID:ENST00000378319Re-query CCDS DB by Protein ID:ENSP00000367570
Original member Current member NCBI NM_001040443.3 NP_001035533.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040443.3Link to Protein Sequence:NP_001035533.1Re-query CCDS DB by Nucleotide ID:NM_001040443Re-query CCDS DB by Protein ID:NP_001035533Link to BLAST:NP_001035533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035533.1 331 Q9UIL8-1 331 100% 0 0

Chromosomal Locations for CCDS 31975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49496002 49496095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49506635 49506756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49513059 49513166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49518018 49518151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49520894 49520940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49522043 49522107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49523175 49523241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49524085 49524216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49526387 49526458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49528511 49528665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGCCCAGGCGTCGCCGCCCCGGCCCGAGAGGGTGCTCGGCGCCAGCAGCCCGGAGGCCCGGCCCGCGC
AGGAGGCGCTCCTCCTTCCCACCGGTGTCTTTCAGGTTGCAGAAAAGATGGAAAAAAGGACATGTGCACT
CTGCCCCAAAGATGTCGAATATAATGTCCTATACTTTGCACAATCAGAGAATATAGCTGCTCATGAGAAT
TGTTTGCTGTATTCTTCAGGACTTGTGGAATGTGAGGATCAGGATCCACTTAATCCTGATAGAAGTTTTG
ATGTGGAATCAGTAAAGAAAGAAATCCAGAGAGGAAGGAAGTTGAAATGCAAATTTTGTCATAAAAGAGG
AGCCACCGTGGGATGTGATTTAAAAAACTGTAACAAGAATTACCACTTTTTCTGTGCCAAGAAGGACGAC
GCAGTTCCACAGTCTGATGGAGTTCGAGGAATTTATAAACTGCTTTGCCAGCAACATGCTCAATTCCCGA
TCATCGCTCAAAGTGCTAAATTTTCAGGAGTGAAAAGAAAAAGAGGAAGGAAGAAACCCCTCTCAGGCAA
TCATGTACAGCCACCCGAAACAATGAAATGTAATACATTCATAAGACAAGTGAAAGAAGAGCATGGCAGA
CACACAGATGCAACTGTGAAAGTTCCTTTTCTTAAGAAATGCAAGGAAGCAGGACTTCTTAATTACTTAC
TTGAAGAAATATTAGACAAAGTTCATTCAATTCCAGAAAAACTCATGGATGAGACTACTTCAGAATCAGA
CTATGAAGAAATCGGGAGTGCACTTTTTGACTGTAGATTGTTCGAAGACACATTTGTAAATTTTCAAGCA
GCAATAGAGAAAAAAATTCATGCATCTCAACAAAGGTGGCAGCAGTTGAAGGAAGAGATTGAGCTACTTC
AGGACTTAAAACAAACCTTGTGCTCTTTTCAAGAAAATAGAGATCTTATGTCAAGTTCTACATCAATATC
ATCCCTGTCTTATTAG

Translation (331 aa):
MAQASPPRPERVLGASSPEARPAQEALLLPTGVFQVAEKMEKRTCALCPKDVEYNVLYFAQSENIAAHEN
CLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDD
AVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGR
HTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQA
AIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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