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Report for CCDS31816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31816.1 Public Homo sapiens 12 OR6C74 24 110 108 CCDS HistoryNCBI Gene:254783Re-query CCDS DB by CCDS ID:31816.1Re-query CCDS DB by GeneID:254783See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343399.5 ENSP00000368987.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343399.5Link to Ensembl Protein Viewer:ENSP00000368987.2Re-query CCDS DB by Nucleotide ID:ENST00000343399Re-query CCDS DB by Protein ID:ENSP00000368987
Original member Current member NCBI NM_001005490.2 NP_001005490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005490.2Link to Protein Sequence:NP_001005490.1Re-query CCDS DB by Nucleotide ID:NM_001005490Re-query CCDS DB by Protein ID:NP_001005490Link to BLAST:NP_001005490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005490.1 312 A6NCV1 312 100% 0 0

Chromosomal Locations for CCDS 31816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55247288 55248226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGAAACCATACAACAGTAGCAAACTTTATTCTTCTTGGACTGACAGATGATCCACAATTACAGGTGA
TTATTTTTCTTCTCCTTTTTTTCACCTACATGTTGAGCATCACTGGGAATCTAACCATCATCACTCTCAC
CCTACTGGATTTGCATCTCAAGACACCCATGTATTTCTTCCTCCGAAATTTCTCATTTTTAGAAGTCTCA
TTCACAACTGTCTACATTCCCAAATTTCTTGTTAGTATGGCAACAGGTGATAAGACCATTTCTTACAACG
ATTGTGCAGCACAGCTGTTTTTCACTATTCTCTTGGGGGCAACTGAATTTTTTCTTCTGGCTGCCATGTC
CTATGAGCGCTATGTGGCCATCTGCAAACCCCTGCATTACACCACCATCATGAGCAGCAGAGTTTGCAGC
TTGCTGGTCTTTGCTTCATGGATGGCTGGCTTCCTAATAATTTTTCCGCCACTCCTGATGGGTCTCCAGC
TTGATTTCTGTGCAGCCAACACTGTAGATCATTTCTTCTGTGATGTTTCTCCTATACTGCAGCTCTCTTG
CACAGACACTGACATAATAGAATTAATGATGCTTCTCTCAGCCATTTTGACGCTCCTGGTTACACTGGTA
TTAGTGATTCTCTCCTACACAAATATTATCAGGACTATTCTGAAAATACCTTCTTCTCAACAGAGAAAAA
AAGCATTTTCTACATGTTCTTCCCACATGGTGGTCGTGTCCATTTCTTATGGCAGCTGCATCTTCATGTA
TGTGAAACCCTCAGCAAAAGAAAGAGTGTCATTAAATAAAGGGATAGCTCTGCTCAGCACTTCTGTTGCC
CCCATGTTGAATCCCTTTATTTATACACTGAGAAACAAACAAGTAAAAGATGTTTTTAAGCACACAGTCA
AAAAGATTGAACTTTTCTCAATGAAATGA

Translation (312 aa):
MRNHTTVANFILLGLTDDPQLQVIIFLLLFFTYMLSITGNLTIITLTLLDLHLKTPMYFFLRNFSFLEVS
FTTVYIPKFLVSMATGDKTISYNDCAAQLFFTILLGATEFFLLAAMSYERYVAICKPLHYTTIMSSRVCS
LLVFASWMAGFLIIFPPLLMGLQLDFCAANTVDHFFCDVSPILQLSCTDTDIIELMMLLSAILTLLVTLV
LVILSYTNIIRTILKIPSSQQRKKAFSTCSSHMVVVSISYGSCIFMYVKPSAKERVSLNKGIALLSTSVA
PMLNPFIYTLRNKQVKDVFKHTVKKIELFSMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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