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Report for CCDS31567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31567.1 Public Homo sapiens 11 MS4A3 24 110 108 CCDS HistoryNCBI Gene:932Re-query CCDS DB by CCDS ID:31567.1Re-query CCDS DB by GeneID:932See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278865.8 ENSP00000278865.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278865.8Link to Ensembl Protein Viewer:ENSP00000278865.3Re-query CCDS DB by Nucleotide ID:ENST00000278865Re-query CCDS DB by Protein ID:ENSP00000278865
Original member Current member NCBI NM_006138.5 NP_006129.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006138.5Link to Protein Sequence:NP_006129.4Re-query CCDS DB by Nucleotide ID:NM_006138Re-query CCDS DB by Protein ID:NP_006129Link to BLAST:NP_006129.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006129.4 214 Q96HJ5-1 214 100% 0 0

Chromosomal Locations for CCDS 31567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60061161 60061316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60062468 60062605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60064262 60064318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60066951 60067112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60069574 60069675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60070204 60070233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGCCTCCCACGAAGTTGATAATGCAGAGCTGGGGTCAGCCTCTGCCCATGGTACCCCAGGCAGTGAGG
CGGGACCAGAAGAGCTGAATACTTCTGTCTACCAGCCCATAGATGGATCACCAGATTATCAGAAAGCAAA
ATTACAAGTTCTTGGGGCCATCCAGATCCTGAATGCAGCAATGATTCTGGCTTTGGGTGTCTTTCTGGGT
TCCTTGCAATACCCATACCACTTCCAAAAGCACTTCTTTTTCTTCACCTTCTACACAGGCTACCCGATTT
GGGGTGCTGTGTTTTTCTGTAGTTCAGGAACCTTGTCTGTTGTAGCAGGGATAAAACCCACAAGAACATG
GATACAGAACAGTTTTGGAATGAACATTGCCAGTGCTACAATTGCACTAGTGGGGACTGCTTTTCTCTCA
CTAAATATAGCAGTTAATATCCAGTCATTAAGGAGTTGTCACTCTTCATCAGAGTCACCGGACCTATGCA
ATTACATGGGCTCCATATCAAATGGCATGGTGTCTCTACTGCTGATTCTCACCTTGCTGGAATTATGCGT
AACCATCTCTACCATAGCCATGTGGTGCAATGCAAACTGCTGTAATTCAAGAGAGGAAATTTCCTCACCT
CCCAATTCTGTGTAA

Translation (214 aa):
MASHEVDNAELGSASAHGTPGSEAGPEELNTSVYQPIDGSPDYQKAKLQVLGAIQILNAAMILALGVFLG
SLQYPYHFQKHFFFFTFYTGYPIWGAVFFCSSGTLSVVAGIKPTRTWIQNSFGMNIASATIALVGTAFLS
LNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSP
PNSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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